Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02400 and CA264_02405 are separated by 614 nucleotides CA264_02405 and CA264_02410 are separated by 120 nucleotides
CA264_02400: CA264_02400 - T9SS C-terminal target domain-containing protein, at 555,103 to 559,530
_02400
CA264_02405: CA264_02405 - beta-ketoacyl-ACP reductase, at 560,145 to 561,341
_02405
CA264_02410: CA264_02410 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 561,462 to 562,778
_02410
Position (kb) 560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 559.182 kb on - strand at 559.293 kb on + strand at 559.293 kb on + strand at 559.293 kb on + strand at 559.294 kb on - strand at 559.294 kb on - strand at 559.328 kb on + strand at 559.378 kb on + strand at 559.379 kb on - strand at 559.382 kb on + strand at 559.383 kb on - strand at 559.441 kb on - strand at 559.441 kb on - strand at 559.441 kb on - strand at 559.495 kb on + strand at 559.504 kb on + strand at 559.505 kb on - strand at 559.515 kb on - strand at 559.530 kb on + strand at 559.539 kb on - strand at 559.562 kb on - strand at 559.562 kb on - strand at 559.564 kb on - strand at 559.593 kb on + strand at 559.607 kb on + strand at 559.608 kb on - strand at 559.622 kb on - strand at 559.652 kb on - strand at 559.658 kb on - strand at 559.681 kb on + strand at 559.704 kb on + strand at 559.708 kb on - strand at 559.708 kb on - strand at 559.731 kb on + strand at 559.731 kb on + strand at 559.732 kb on - strand at 559.734 kb on + strand at 559.734 kb on + strand at 559.735 kb on - strand at 559.735 kb on - strand at 559.740 kb on + strand at 559.740 kb on + strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.742 kb on + strand at 559.743 kb on - strand at 559.746 kb on - strand at 559.755 kb on + strand at 559.772 kb on - strand at 559.785 kb on - strand at 559.793 kb on - strand at 559.846 kb on + strand at 559.847 kb on - strand at 559.876 kb on + strand at 560.014 kb on - strand at 560.083 kb on + strand at 560.203 kb on - strand at 560.203 kb on - strand at 560.270 kb on - strand, within CA264_02405 at 560.270 kb on - strand, within CA264_02405 at 560.292 kb on + strand, within CA264_02405 at 560.293 kb on - strand, within CA264_02405 at 560.299 kb on + strand, within CA264_02405 at 560.351 kb on + strand, within CA264_02405 at 560.351 kb on + strand, within CA264_02405 at 560.351 kb on + strand, within CA264_02405 at 560.352 kb on - strand, within CA264_02405 at 560.646 kb on + strand, within CA264_02405 at 560.646 kb on + strand, within CA264_02405 at 560.651 kb on + strand, within CA264_02405 at 560.652 kb on - strand, within CA264_02405 at 560.652 kb on - strand, within CA264_02405 at 560.693 kb on - strand, within CA264_02405 at 560.716 kb on + strand, within CA264_02405 at 560.855 kb on + strand, within CA264_02405 at 560.914 kb on - strand, within CA264_02405 at 560.957 kb on + strand, within CA264_02405 at 560.958 kb on - strand, within CA264_02405 at 560.977 kb on + strand, within CA264_02405 at 560.977 kb on + strand, within CA264_02405 at 560.978 kb on - strand, within CA264_02405 at 561.018 kb on + strand, within CA264_02405 at 561.019 kb on - strand, within CA264_02405 at 561.019 kb on - strand, within CA264_02405 at 561.162 kb on + strand, within CA264_02405 at 561.163 kb on - strand, within CA264_02405 at 561.321 kb on - strand at 561.357 kb on - strand at 561.363 kb on + strand at 561.364 kb on - strand at 561.364 kb on - strand at 561.364 kb on - strand at 561.430 kb on + strand at 561.432 kb on + strand at 561.433 kb on - strand at 561.433 kb on - strand at 561.437 kb on + strand at 561.437 kb on + strand at 561.438 kb on - strand at 561.545 kb on - strand at 561.545 kb on - strand at 561.577 kb on + strand at 561.587 kb on + strand at 561.588 kb on - strand at 561.593 kb on - strand at 561.593 kb on - strand at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.674 kb on - strand, within CA264_02410 at 561.711 kb on - strand, within CA264_02410 at 561.756 kb on - strand, within CA264_02410 at 561.795 kb on + strand, within CA264_02410 at 561.797 kb on + strand, within CA264_02410 at 561.798 kb on - strand, within CA264_02410 at 561.798 kb on - strand, within CA264_02410 at 561.866 kb on + strand, within CA264_02410 at 561.875 kb on - strand, within CA264_02410 at 562.139 kb on - strand, within CA264_02410 at 562.182 kb on - strand, within CA264_02410 at 562.228 kb on - strand, within CA264_02410 at 562.285 kb on + strand, within CA264_02410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 559,182 - -0.0 559,293 + +0.5 559,293 + -0.3 559,293 + +0.5 559,294 - -0.2 559,294 - +0.6 559,328 + +0.7 559,378 + +0.1 559,379 - -0.8 559,382 + +0.4 559,383 - -0.4 559,441 - +0.1 559,441 - +0.6 559,441 - +0.4 559,495 + +0.2 559,504 + +1.5 559,505 - +0.6 559,515 - -0.2 559,530 + +0.2 559,539 - +0.1 559,562 - +0.7 559,562 - -0.5 559,564 - +0.8 559,593 + +0.1 559,607 + +1.1 559,608 - -0.5 559,622 - -0.2 559,652 - +0.9 559,658 - +2.0 559,681 + -1.0 559,704 + +1.5 559,708 - +0.6 559,708 - -0.1 559,731 + +0.1 559,731 + +0.2 559,732 - -0.4 559,734 + +0.6 559,734 + +0.1 559,735 - +0.4 559,735 - -0.3 559,740 + +0.3 559,740 + -0.8 559,741 - +0.1 559,741 - +0.3 559,741 - -0.3 559,741 - +0.7 559,741 - +0.5 559,741 - +0.0 559,741 - -0.3 559,741 - -0.3 559,742 + -1.0 559,743 - +0.5 559,746 - +0.7 559,755 + +2.2 559,772 - +0.5 559,785 - -0.0 559,793 - +0.3 559,846 + +0.5 559,847 - +0.3 559,876 + -0.6 560,014 - +1.1 560,083 + -0.1 560,203 - +0.7 560,203 - +1.3 560,270 - CA264_02405 0.10 +0.2 560,270 - CA264_02405 0.10 -1.2 560,292 + CA264_02405 0.12 -1.0 560,293 - CA264_02405 0.12 +0.1 560,299 + CA264_02405 0.13 +0.6 560,351 + CA264_02405 0.17 +0.2 560,351 + CA264_02405 0.17 +1.6 560,351 + CA264_02405 0.17 +0.5 560,352 - CA264_02405 0.17 -1.1 560,646 + CA264_02405 0.42 +0.1 560,646 + CA264_02405 0.42 +0.0 560,651 + CA264_02405 0.42 +0.0 560,652 - CA264_02405 0.42 -1.1 560,652 - CA264_02405 0.42 +0.2 560,693 - CA264_02405 0.46 +2.5 560,716 + CA264_02405 0.48 -0.3 560,855 + CA264_02405 0.59 +2.4 560,914 - CA264_02405 0.64 -2.1 560,957 + CA264_02405 0.68 +0.0 560,958 - CA264_02405 0.68 -2.1 560,977 + CA264_02405 0.70 -0.0 560,977 + CA264_02405 0.70 -0.3 560,978 - CA264_02405 0.70 +0.1 561,018 + CA264_02405 0.73 -0.5 561,019 - CA264_02405 0.73 -0.2 561,019 - CA264_02405 0.73 +0.6 561,162 + CA264_02405 0.85 -0.8 561,163 - CA264_02405 0.85 +0.5 561,321 - -1.1 561,357 - -2.2 561,363 + -0.4 561,364 - -0.3 561,364 - -0.1 561,364 - -0.6 561,430 + -0.7 561,432 + +0.7 561,433 - +0.5 561,433 - -0.3 561,437 + -0.4 561,437 + +1.4 561,438 - -0.4 561,545 - -0.4 561,545 - -0.5 561,577 + -0.3 561,587 + -0.9 561,588 - -0.2 561,593 - -2.3 561,593 - -0.2 561,596 + CA264_02410 0.10 -1.3 561,596 + CA264_02410 0.10 -0.0 561,596 + CA264_02410 0.10 -1.2 561,596 + CA264_02410 0.10 +1.8 561,596 + CA264_02410 0.10 +0.1 561,597 - CA264_02410 0.10 -1.3 561,597 - CA264_02410 0.10 -1.7 561,597 - CA264_02410 0.10 -0.5 561,597 - CA264_02410 0.10 -0.2 561,597 - CA264_02410 0.10 -0.9 561,597 - CA264_02410 0.10 -0.1 561,674 - CA264_02410 0.16 -2.5 561,711 - CA264_02410 0.19 -0.3 561,756 - CA264_02410 0.22 -0.7 561,795 + CA264_02410 0.25 -0.0 561,797 + CA264_02410 0.25 +0.3 561,798 - CA264_02410 0.26 +2.9 561,798 - CA264_02410 0.26 -1.3 561,866 + CA264_02410 0.31 -0.1 561,875 - CA264_02410 0.31 -0.6 562,139 - CA264_02410 0.51 -0.8 562,182 - CA264_02410 0.55 +3.2 562,228 - CA264_02410 0.58 -0.4 562,285 + CA264_02410 0.62 -0.6
Or see this region's nucleotide sequence