Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01480

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01475 and CA264_01480 are separated by 1 nucleotidesCA264_01480 and CA264_01485 are separated by 90 nucleotidesCA264_01485 and CA264_01490 are separated by 29 nucleotides CA264_01475: CA264_01475 - hypothetical protein, at 349,636 to 351,642 _01475 CA264_01480: CA264_01480 - dihydroorotase, at 351,644 to 352,909 _01480 CA264_01485: CA264_01485 - hypothetical protein, at 353,000 to 353,479 _01485 CA264_01490: CA264_01490 - DUF4199 domain-containing protein, at 353,509 to 354,027 _01490 Position (kb) 351 352 353Strain fitness (log2 ratio) -2 -1 0 1 2at 350.671 kb on + strand, within CA264_01475at 350.672 kb on - strand, within CA264_01475at 350.679 kb on + strand, within CA264_01475at 350.687 kb on + strand, within CA264_01475at 350.692 kb on + strand, within CA264_01475at 350.693 kb on - strand, within CA264_01475at 350.724 kb on - strand, within CA264_01475at 350.735 kb on + strand, within CA264_01475at 350.736 kb on - strand, within CA264_01475at 350.836 kb on + strand, within CA264_01475at 350.837 kb on - strand, within CA264_01475at 350.907 kb on + strand, within CA264_01475at 350.929 kb on - strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.037 kb on + strand, within CA264_01475at 351.038 kb on - strand, within CA264_01475at 351.039 kb on + strand, within CA264_01475at 351.040 kb on - strand, within CA264_01475at 351.184 kb on + strand, within CA264_01475at 351.185 kb on - strand, within CA264_01475at 351.209 kb on - strand, within CA264_01475at 351.225 kb on + strand, within CA264_01475at 351.225 kb on + strand, within CA264_01475at 351.226 kb on - strand, within CA264_01475at 351.271 kb on + strand, within CA264_01475at 351.271 kb on + strand, within CA264_01475at 351.272 kb on - strand, within CA264_01475at 351.272 kb on - strand, within CA264_01475at 351.332 kb on + strand, within CA264_01475at 351.332 kb on + strand, within CA264_01475at 351.339 kb on + strand, within CA264_01475at 351.402 kb on - strand, within CA264_01475at 351.421 kb on + strand, within CA264_01475at 351.451 kb on + strandat 351.452 kb on - strandat 351.452 kb on - strandat 351.453 kb on + strandat 351.508 kb on + strandat 351.509 kb on - strandat 351.580 kb on + strandat 351.580 kb on + strandat 351.591 kb on - strandat 351.651 kb on + strandat 351.651 kb on + strandat 351.670 kb on + strandat 351.670 kb on + strandat 351.731 kb on - strandat 351.744 kb on + strandat 351.958 kb on + strand, within CA264_01480at 351.959 kb on - strand, within CA264_01480at 351.963 kb on - strand, within CA264_01480at 352.470 kb on + strand, within CA264_01480at 352.470 kb on + strand, within CA264_01480at 352.511 kb on - strand, within CA264_01480at 352.821 kb on - strandat 352.910 kb on + strandat 352.913 kb on - strandat 352.913 kb on - strandat 352.916 kb on + strandat 352.916 kb on + strandat 352.918 kb on + strandat 352.918 kb on + strandat 352.919 kb on - strandat 352.969 kb on + strandat 352.969 kb on + strandat 352.970 kb on - strandat 353.002 kb on - strandat 353.041 kb on - strandat 353.067 kb on - strand, within CA264_01485at 353.100 kb on - strand, within CA264_01485at 353.141 kb on + strand, within CA264_01485at 353.143 kb on + strand, within CA264_01485at 353.150 kb on + strand, within CA264_01485at 353.250 kb on + strand, within CA264_01485at 353.273 kb on - strand, within CA264_01485at 353.331 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.395 kb on + strand, within CA264_01485at 353.396 kb on - strand, within CA264_01485at 353.464 kb on - strandat 353.477 kb on + strandat 353.477 kb on + strandat 353.540 kb on + strandat 353.541 kb on - strandat 353.547 kb on - strandat 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.592 kb on + strand, within CA264_01490at 353.593 kb on - strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.594 kb on + strand, within CA264_01490at 353.701 kb on + strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.702 kb on - strand, within CA264_01490at 353.707 kb on + strand, within CA264_01490at 353.708 kb on - strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.709 kb on + strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.710 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.782 kb on - strand, within CA264_01490at 353.815 kb on + strand, within CA264_01490

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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350,671 + CA264_01475 0.52 +0.3
350,672 - CA264_01475 0.52 +0.3
350,679 + CA264_01475 0.52 +1.0
350,687 + CA264_01475 0.52 -0.6
350,692 + CA264_01475 0.53 -0.7
350,693 - CA264_01475 0.53 +0.3
350,724 - CA264_01475 0.54 +0.9
350,735 + CA264_01475 0.55 -0.1
350,736 - CA264_01475 0.55 -0.1
350,836 + CA264_01475 0.60 -0.1
350,837 - CA264_01475 0.60 -0.1
350,907 + CA264_01475 0.63 +1.3
350,929 - CA264_01475 0.64 +0.3
351,000 + CA264_01475 0.68 +0.3
351,000 + CA264_01475 0.68 +0.2
351,000 + CA264_01475 0.68 +1.3
351,037 + CA264_01475 0.70 +0.6
351,038 - CA264_01475 0.70 -1.5
351,039 + CA264_01475 0.70 +0.7
351,040 - CA264_01475 0.70 -0.3
351,184 + CA264_01475 0.77 -0.8
351,185 - CA264_01475 0.77 +0.7
351,209 - CA264_01475 0.78 +0.1
351,225 + CA264_01475 0.79 -0.2
351,225 + CA264_01475 0.79 -2.3
351,226 - CA264_01475 0.79 -0.3
351,271 + CA264_01475 0.81 -0.2
351,271 + CA264_01475 0.81 -1.8
351,272 - CA264_01475 0.82 +0.1
351,272 - CA264_01475 0.82 -0.3
351,332 + CA264_01475 0.85 +0.1
351,332 + CA264_01475 0.85 -0.9
351,339 + CA264_01475 0.85 -0.4
351,402 - CA264_01475 0.88 -0.2
351,421 + CA264_01475 0.89 +1.3
351,451 + -0.6
351,452 - -0.4
351,452 - +0.1
351,453 + -0.0
351,508 + +0.7
351,509 - +1.7
351,580 + -0.5
351,580 + +0.5
351,591 - -0.1
351,651 + +0.2
351,651 + +1.1
351,670 + +2.6
351,670 + +0.3
351,731 - +0.5
351,744 + +0.1
351,958 + CA264_01480 0.25 -0.4
351,959 - CA264_01480 0.25 -0.1
351,963 - CA264_01480 0.25 +0.1
352,470 + CA264_01480 0.65 +0.2
352,470 + CA264_01480 0.65 +0.4
352,511 - CA264_01480 0.68 -0.7
352,821 - +0.0
352,910 + +0.6
352,913 - +0.4
352,913 - +0.3
352,916 + +0.2
352,916 + -0.1
352,918 + +0.7
352,918 + +0.1
352,919 - -0.1
352,969 + -0.6
352,969 + -0.5
352,970 - -0.2
353,002 - +0.1
353,041 - -0.1
353,067 - CA264_01485 0.14 +0.2
353,100 - CA264_01485 0.21 +0.2
353,141 + CA264_01485 0.29 +0.3
353,143 + CA264_01485 0.30 +0.6
353,150 + CA264_01485 0.31 +0.2
353,250 + CA264_01485 0.52 -0.3
353,273 - CA264_01485 0.57 -1.2
353,331 + CA264_01485 0.69 +1.0
353,395 + CA264_01485 0.82 +0.3
353,395 + CA264_01485 0.82 +0.1
353,396 - CA264_01485 0.82 -0.7
353,464 - +0.3
353,477 + +0.1
353,477 + +0.9
353,540 + +0.1
353,541 - -2.2
353,547 - -0.7
353,592 + CA264_01490 0.16 +0.1
353,592 + CA264_01490 0.16 -0.6
353,592 + CA264_01490 0.16 -0.3
353,592 + CA264_01490 0.16 +0.1
353,593 - CA264_01490 0.16 -0.7
353,594 + CA264_01490 0.16 -0.1
353,594 + CA264_01490 0.16 +0.3
353,594 + CA264_01490 0.16 +0.4
353,701 + CA264_01490 0.37 +0.5
353,702 - CA264_01490 0.37 +0.3
353,702 - CA264_01490 0.37 -0.1
353,702 - CA264_01490 0.37 -0.4
353,707 + CA264_01490 0.38 +0.3
353,708 - CA264_01490 0.38 -0.4
353,709 + CA264_01490 0.39 +0.2
353,709 + CA264_01490 0.39 +0.8
353,709 + CA264_01490 0.39 -0.4
353,709 + CA264_01490 0.39 +0.1
353,709 + CA264_01490 0.39 -0.4
353,710 - CA264_01490 0.39 -0.1
353,710 - CA264_01490 0.39 -2.2
353,782 - CA264_01490 0.53 -0.6
353,782 - CA264_01490 0.53 -0.9
353,815 + CA264_01490 0.59 +0.1

Or see this region's nucleotide sequence