Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01420

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01415 and CA264_01420 are separated by 82 nucleotidesCA264_01420 and CA264_01425 are separated by 248 nucleotides CA264_01415: CA264_01415 - trigger factor, at 337,261 to 338,583 _01415 CA264_01420: CA264_01420 - tRNA-Leu, at 338,666 to 338,747 _01420 CA264_01425: CA264_01425 - RelA/SpoT family protein, at 338,996 to 341,188 _01425 Position (kb) 338 339Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 337.864 kb on + strand, within CA264_01415at 337.921 kb on + strand, within CA264_01415at 338.007 kb on + strand, within CA264_01415at 338.008 kb on - strand, within CA264_01415at 338.021 kb on - strand, within CA264_01415at 338.091 kb on + strand, within CA264_01415at 338.203 kb on + strand, within CA264_01415at 338.204 kb on - strand, within CA264_01415at 338.356 kb on - strand, within CA264_01415at 338.356 kb on - strand, within CA264_01415at 338.412 kb on - strand, within CA264_01415at 338.438 kb on - strand, within CA264_01415at 338.569 kb on + strandat 338.612 kb on + strandat 338.616 kb on + strandat 338.641 kb on + strandat 338.766 kb on - strandat 338.783 kb on - strandat 338.796 kb on - strandat 338.807 kb on - strandat 338.847 kb on - strandat 338.883 kb on - strandat 338.896 kb on + strandat 338.897 kb on - strandat 338.897 kb on - strandat 338.906 kb on + strandat 338.909 kb on - strandat 338.919 kb on + strandat 338.936 kb on - strandat 338.936 kb on - strandat 338.939 kb on + strandat 338.939 kb on + strandat 338.940 kb on - strandat 338.940 kb on - strandat 338.941 kb on + strandat 338.942 kb on - strandat 338.945 kb on + strandat 338.945 kb on + strandat 338.945 kb on + strandat 338.945 kb on + strandat 338.946 kb on - strandat 338.946 kb on - strandat 338.946 kb on - strandat 338.946 kb on - strandat 338.946 kb on - strandat 338.947 kb on + strandat 338.948 kb on - strandat 338.948 kb on - strandat 338.948 kb on - strandat 338.977 kb on + strandat 338.977 kb on + strandat 338.978 kb on - strandat 338.979 kb on + strandat 338.979 kb on + strandat 338.979 kb on + strandat 338.979 kb on + strandat 338.979 kb on + strandat 338.982 kb on + strandat 338.982 kb on + strandat 338.982 kb on + strandat 338.983 kb on - strandat 338.983 kb on - strandat 338.983 kb on - strandat 338.983 kb on - strandat 338.984 kb on + strandat 338.985 kb on - strandat 338.985 kb on - strandat 338.993 kb on - strandat 339.006 kb on + strandat 339.007 kb on - strandat 339.027 kb on + strandat 339.028 kb on - strandat 339.030 kb on + strandat 339.031 kb on - strandat 339.038 kb on + strandat 339.057 kb on - strandat 339.161 kb on + strandat 339.161 kb on + strandat 339.161 kb on + strandat 339.161 kb on + strandat 339.161 kb on + strandat 339.162 kb on - strandat 339.221 kb on - strand, within CA264_01425at 339.321 kb on + strand, within CA264_01425at 339.519 kb on - strand, within CA264_01425at 339.519 kb on - strand, within CA264_01425at 339.554 kb on + strand, within CA264_01425at 339.554 kb on + strand, within CA264_01425at 339.555 kb on - strand, within CA264_01425at 339.555 kb on - strand, within CA264_01425at 339.585 kb on - strand, within CA264_01425at 339.608 kb on - strand, within CA264_01425at 339.608 kb on - strand, within CA264_01425at 339.609 kb on + strand, within CA264_01425at 339.609 kb on + strand, within CA264_01425at 339.609 kb on + strand, within CA264_01425at 339.609 kb on + strand, within CA264_01425at 339.609 kb on + strand, within CA264_01425at 339.609 kb on + strand, within CA264_01425at 339.610 kb on - strand, within CA264_01425at 339.610 kb on - strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.611 kb on + strand, within CA264_01425at 339.612 kb on - strand, within CA264_01425at 339.612 kb on - strand, within CA264_01425at 339.612 kb on - strand, within CA264_01425at 339.676 kb on + strand, within CA264_01425at 339.688 kb on - strand, within CA264_01425at 339.707 kb on + strand, within CA264_01425at 339.707 kb on + strand, within CA264_01425at 339.707 kb on + strand, within CA264_01425at 339.707 kb on + strand, within CA264_01425at 339.707 kb on + strand, within CA264_01425at 339.707 kb on + strand, within CA264_01425at 339.707 kb on + strand, within CA264_01425at 339.708 kb on - strand, within CA264_01425at 339.708 kb on - strand, within CA264_01425at 339.715 kb on + strand, within CA264_01425

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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337,864 + CA264_01415 0.46 -1.7
337,921 + CA264_01415 0.50 -1.5
338,007 + CA264_01415 0.56 -1.4
338,008 - CA264_01415 0.56 -4.2
338,021 - CA264_01415 0.57 -2.6
338,091 + CA264_01415 0.63 -1.5
338,203 + CA264_01415 0.71 -2.0
338,204 - CA264_01415 0.71 -1.5
338,356 - CA264_01415 0.83 -1.2
338,356 - CA264_01415 0.83 -3.1
338,412 - CA264_01415 0.87 -4.7
338,438 - CA264_01415 0.89 -2.4
338,569 + -1.7
338,612 + -1.1
338,616 + -0.6
338,641 + +0.0
338,766 - -0.5
338,783 - -3.1
338,796 - -0.3
338,807 - -0.8
338,847 - +0.3
338,883 - +0.0
338,896 + +0.0
338,897 - +1.3
338,897 - -0.1
338,906 + -0.5
338,909 - -0.3
338,919 + -0.4
338,936 - +0.5
338,936 - +0.3
338,939 + +0.0
338,939 + +0.6
338,940 - +1.7
338,940 - +0.3
338,941 + +1.4
338,942 - -0.2
338,945 + +1.1
338,945 + +0.2
338,945 + +0.7
338,945 + +0.6
338,946 - +0.5
338,946 - +0.1
338,946 - +0.3
338,946 - +0.3
338,946 - +0.3
338,947 + +0.7
338,948 - +0.1
338,948 - +0.1
338,948 - +0.0
338,977 + +0.2
338,977 + +0.1
338,978 - +0.7
338,979 + +0.5
338,979 + -0.7
338,979 + +0.4
338,979 + +0.9
338,979 + -0.2
338,982 + -1.7
338,982 + -0.2
338,982 + -0.4
338,983 - -0.9
338,983 - +0.7
338,983 - +1.7
338,983 - +0.9
338,984 + -1.1
338,985 - +0.6
338,985 - +0.3
338,993 - -0.9
339,006 + +1.8
339,007 - +0.4
339,027 + -3.1
339,028 - +0.8
339,030 + -2.1
339,031 - +1.2
339,038 + -4.0
339,057 - +0.7
339,161 + -0.6
339,161 + -1.0
339,161 + -2.9
339,161 + -0.9
339,161 + -1.6
339,162 - -2.5
339,221 - CA264_01425 0.10 -1.8
339,321 + CA264_01425 0.15 -0.3
339,519 - CA264_01425 0.24 -1.9
339,519 - CA264_01425 0.24 -1.2
339,554 + CA264_01425 0.25 -1.2
339,554 + CA264_01425 0.25 -2.3
339,555 - CA264_01425 0.25 -0.3
339,555 - CA264_01425 0.25 -2.5
339,585 - CA264_01425 0.27 +0.2
339,608 - CA264_01425 0.28 +0.3
339,608 - CA264_01425 0.28 +0.5
339,609 + CA264_01425 0.28 -0.7
339,609 + CA264_01425 0.28 -1.3
339,609 + CA264_01425 0.28 -1.0
339,609 + CA264_01425 0.28 -0.4
339,609 + CA264_01425 0.28 -0.5
339,609 + CA264_01425 0.28 +0.7
339,610 - CA264_01425 0.28 +0.3
339,610 - CA264_01425 0.28 -0.9
339,611 + CA264_01425 0.28 +0.5
339,611 + CA264_01425 0.28 -0.4
339,611 + CA264_01425 0.28 -3.1
339,611 + CA264_01425 0.28 -0.8
339,611 + CA264_01425 0.28 -1.3
339,611 + CA264_01425 0.28 -2.3
339,611 + CA264_01425 0.28 -0.9
339,611 + CA264_01425 0.28 -1.0
339,612 - CA264_01425 0.28 -1.1
339,612 - CA264_01425 0.28 -1.6
339,612 - CA264_01425 0.28 -2.4
339,676 + CA264_01425 0.31 -0.7
339,688 - CA264_01425 0.32 -1.1
339,707 + CA264_01425 0.32 +0.5
339,707 + CA264_01425 0.32 -1.3
339,707 + CA264_01425 0.32 +0.0
339,707 + CA264_01425 0.32 -0.7
339,707 + CA264_01425 0.32 -1.4
339,707 + CA264_01425 0.32 -0.6
339,707 + CA264_01425 0.32 -1.5
339,708 - CA264_01425 0.32 -0.3
339,708 - CA264_01425 0.32 -0.9
339,715 + CA264_01425 0.33 -1.4

Or see this region's nucleotide sequence