Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00600

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00590 and CA264_00595 are separated by 169 nucleotidesCA264_00595 and CA264_00600 are separated by 107 nucleotidesCA264_00600 and CA264_00605 are separated by 251 nucleotidesCA264_00605 and CA264_00610 are separated by 80 nucleotides CA264_00590: CA264_00590 - ribose-phosphate pyrophosphokinase, at 130,396 to 131,325 _00590 CA264_00595: CA264_00595 - tRNA-Gln, at 131,495 to 131,567 _00595 CA264_00600: CA264_00600 - phosphoribosylformylglycinamidine synthase II, at 131,675 to 133,891 _00600 CA264_00605: CA264_00605 - hypothetical protein, at 134,143 to 134,367 _00605 CA264_00610: CA264_00610 - hypothetical protein, at 134,448 to 134,939 _00610 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 131.335 kb on - strandat 131.371 kb on - strandat 131.434 kb on + strandat 131.967 kb on + strand, within CA264_00600at 131.970 kb on - strand, within CA264_00600at 131.970 kb on - strand, within CA264_00600at 132.070 kb on - strand, within CA264_00600at 132.089 kb on + strand, within CA264_00600at 132.099 kb on + strand, within CA264_00600at 132.099 kb on + strand, within CA264_00600at 132.105 kb on + strand, within CA264_00600at 132.106 kb on - strand, within CA264_00600at 132.106 kb on - strand, within CA264_00600at 132.106 kb on - strand, within CA264_00600at 132.153 kb on + strand, within CA264_00600at 132.153 kb on + strand, within CA264_00600at 132.153 kb on + strand, within CA264_00600at 132.153 kb on + strand, within CA264_00600at 132.153 kb on + strand, within CA264_00600at 132.154 kb on - strand, within CA264_00600at 132.154 kb on - strand, within CA264_00600at 132.154 kb on - strand, within CA264_00600at 132.154 kb on - strand, within CA264_00600at 132.154 kb on - strand, within CA264_00600at 132.157 kb on + strand, within CA264_00600at 132.157 kb on + strand, within CA264_00600at 132.157 kb on + strand, within CA264_00600at 132.157 kb on + strand, within CA264_00600at 132.158 kb on - strand, within CA264_00600at 132.274 kb on - strand, within CA264_00600at 132.360 kb on + strand, within CA264_00600at 132.360 kb on + strand, within CA264_00600at 132.362 kb on + strand, within CA264_00600at 132.431 kb on + strand, within CA264_00600at 132.431 kb on + strand, within CA264_00600at 132.432 kb on - strand, within CA264_00600at 132.436 kb on + strand, within CA264_00600at 132.600 kb on - strand, within CA264_00600at 132.600 kb on - strand, within CA264_00600at 132.613 kb on - strand, within CA264_00600at 132.682 kb on - strand, within CA264_00600at 132.732 kb on + strand, within CA264_00600at 132.732 kb on + strand, within CA264_00600at 132.736 kb on - strand, within CA264_00600at 132.736 kb on - strand, within CA264_00600at 132.812 kb on + strand, within CA264_00600at 132.813 kb on - strand, within CA264_00600at 132.832 kb on - strand, within CA264_00600at 132.835 kb on - strand, within CA264_00600at 132.908 kb on + strand, within CA264_00600at 132.921 kb on + strand, within CA264_00600at 132.921 kb on + strand, within CA264_00600at 132.922 kb on - strand, within CA264_00600at 133.064 kb on - strand, within CA264_00600at 133.173 kb on - strand, within CA264_00600at 133.273 kb on + strand, within CA264_00600at 133.296 kb on + strand, within CA264_00600at 133.296 kb on + strand, within CA264_00600at 133.296 kb on + strand, within CA264_00600at 133.297 kb on - strand, within CA264_00600at 133.371 kb on + strand, within CA264_00600at 133.371 kb on + strand, within CA264_00600at 133.371 kb on + strand, within CA264_00600at 133.538 kb on - strand, within CA264_00600at 133.625 kb on - strand, within CA264_00600at 133.809 kb on - strandat 133.874 kb on - strandat 133.896 kb on - strandat 133.905 kb on - strandat 133.908 kb on + strandat 133.908 kb on + strandat 133.909 kb on - strandat 133.933 kb on + strandat 133.933 kb on + strandat 133.933 kb on + strandat 133.934 kb on - strandat 133.934 kb on - strandat 133.934 kb on - strandat 133.934 kb on - strandat 133.935 kb on + strandat 133.936 kb on - strandat 133.938 kb on + strandat 133.941 kb on - strandat 133.951 kb on + strandat 134.033 kb on - strandat 134.054 kb on - strandat 134.068 kb on - strandat 134.069 kb on + strandat 134.070 kb on - strandat 134.075 kb on + strandat 134.098 kb on + strandat 134.124 kb on - strandat 134.143 kb on - strandat 134.153 kb on + strandat 134.153 kb on + strandat 134.175 kb on + strand, within CA264_00605at 134.216 kb on + strand, within CA264_00605at 134.217 kb on - strand, within CA264_00605at 134.219 kb on + strand, within CA264_00605at 134.219 kb on + strand, within CA264_00605at 134.220 kb on - strand, within CA264_00605at 134.242 kb on - strand, within CA264_00605at 134.262 kb on + strand, within CA264_00605at 134.262 kb on + strand, within CA264_00605at 134.311 kb on - strand, within CA264_00605at 134.320 kb on + strand, within CA264_00605at 134.321 kb on - strand, within CA264_00605at 134.321 kb on - strand, within CA264_00605at 134.363 kb on + strandat 134.364 kb on - strandat 134.364 kb on - strandat 134.414 kb on + strandat 134.414 kb on + strandat 134.421 kb on + strandat 134.435 kb on - strandat 134.442 kb on - strandat 134.447 kb on + strandat 134.448 kb on - strandat 134.455 kb on - strandat 134.461 kb on - strandat 134.691 kb on + strand, within CA264_00610at 134.759 kb on - strand, within CA264_00610at 134.793 kb on + strand, within CA264_00610at 134.794 kb on - strand, within CA264_00610at 134.843 kb on + strand, within CA264_00610at 134.887 kb on + strand, within CA264_00610at 134.888 kb on - strand, within CA264_00610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
131,335 - -1.9
131,371 - -0.8
131,434 + -0.9
131,967 + CA264_00600 0.13 -0.7
131,970 - CA264_00600 0.13 -0.7
131,970 - CA264_00600 0.13 -1.1
132,070 - CA264_00600 0.18 -0.1
132,089 + CA264_00600 0.19 -0.6
132,099 + CA264_00600 0.19 -0.2
132,099 + CA264_00600 0.19 +0.9
132,105 + CA264_00600 0.19 -0.7
132,106 - CA264_00600 0.19 +0.5
132,106 - CA264_00600 0.19 -0.6
132,106 - CA264_00600 0.19 -0.4
132,153 + CA264_00600 0.22 +0.2
132,153 + CA264_00600 0.22 -0.2
132,153 + CA264_00600 0.22 -0.1
132,153 + CA264_00600 0.22 -0.3
132,153 + CA264_00600 0.22 +0.3
132,154 - CA264_00600 0.22 -0.6
132,154 - CA264_00600 0.22 -1.4
132,154 - CA264_00600 0.22 -1.0
132,154 - CA264_00600 0.22 +0.4
132,154 - CA264_00600 0.22 -0.4
132,157 + CA264_00600 0.22 +1.0
132,157 + CA264_00600 0.22 +1.6
132,157 + CA264_00600 0.22 -1.4
132,157 + CA264_00600 0.22 -0.8
132,158 - CA264_00600 0.22 +0.1
132,274 - CA264_00600 0.27 -1.8
132,360 + CA264_00600 0.31 -0.7
132,360 + CA264_00600 0.31 -0.4
132,362 + CA264_00600 0.31 -2.5
132,431 + CA264_00600 0.34 -2.3
132,431 + CA264_00600 0.34 -1.1
132,432 - CA264_00600 0.34 +0.7
132,436 + CA264_00600 0.34 -0.8
132,600 - CA264_00600 0.42 -0.3
132,600 - CA264_00600 0.42 +0.2
132,613 - CA264_00600 0.42 -0.9
132,682 - CA264_00600 0.45 -1.2
132,732 + CA264_00600 0.48 -1.8
132,732 + CA264_00600 0.48 -1.2
132,736 - CA264_00600 0.48 -0.3
132,736 - CA264_00600 0.48 -0.2
132,812 + CA264_00600 0.51 -1.0
132,813 - CA264_00600 0.51 -0.5
132,832 - CA264_00600 0.52 -0.5
132,835 - CA264_00600 0.52 +0.1
132,908 + CA264_00600 0.56 -1.0
132,921 + CA264_00600 0.56 -2.7
132,921 + CA264_00600 0.56 -0.4
132,922 - CA264_00600 0.56 -0.1
133,064 - CA264_00600 0.63 -0.1
133,173 - CA264_00600 0.68 -0.6
133,273 + CA264_00600 0.72 -0.7
133,296 + CA264_00600 0.73 -0.2
133,296 + CA264_00600 0.73 -0.9
133,296 + CA264_00600 0.73 +0.2
133,297 - CA264_00600 0.73 -0.2
133,371 + CA264_00600 0.76 +0.6
133,371 + CA264_00600 0.76 -0.8
133,371 + CA264_00600 0.76 -0.0
133,538 - CA264_00600 0.84 -1.0
133,625 - CA264_00600 0.88 +0.5
133,809 - -0.2
133,874 - +0.3
133,896 - +0.5
133,905 - +0.3
133,908 + +2.3
133,908 + -1.5
133,909 - +0.6
133,933 + -0.6
133,933 + +0.3
133,933 + +0.3
133,934 - +0.5
133,934 - -1.4
133,934 - +0.3
133,934 - +2.3
133,935 + +0.9
133,936 - -0.9
133,938 + -1.7
133,941 - -0.7
133,951 + -0.2
134,033 - +0.8
134,054 - +0.5
134,068 - -0.3
134,069 + -0.5
134,070 - +0.2
134,075 + +0.0
134,098 + -0.1
134,124 - -0.4
134,143 - -0.4
134,153 + +0.7
134,153 + +0.7
134,175 + CA264_00605 0.14 -0.4
134,216 + CA264_00605 0.32 -0.1
134,217 - CA264_00605 0.33 +2.6
134,219 + CA264_00605 0.34 +0.9
134,219 + CA264_00605 0.34 -0.2
134,220 - CA264_00605 0.34 +0.2
134,242 - CA264_00605 0.44 -0.6
134,262 + CA264_00605 0.53 +0.4
134,262 + CA264_00605 0.53 -2.0
134,311 - CA264_00605 0.75 -0.4
134,320 + CA264_00605 0.79 +0.8
134,321 - CA264_00605 0.79 -0.4
134,321 - CA264_00605 0.79 -1.1
134,363 + -0.2
134,364 - -2.1
134,364 - +0.4
134,414 + +0.4
134,414 + +2.6
134,421 + -0.1
134,435 - +0.5
134,442 - +0.0
134,447 + +0.3
134,448 - +0.7
134,455 - -0.1
134,461 - +0.3
134,691 + CA264_00610 0.49 +0.1
134,759 - CA264_00610 0.63 -0.1
134,793 + CA264_00610 0.70 -0.9
134,794 - CA264_00610 0.70 -0.7
134,843 + CA264_00610 0.80 +0.9
134,887 + CA264_00610 0.89 -0.2
134,888 - CA264_00610 0.89 -1.1

Or see this region's nucleotide sequence