Strain Fitness in Agrobacterium fabrum C58 around Atu5187

Experiment: Ethanolamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5185 and Atu5186 overlap by 20 nucleotidesAtu5186 and Atu5187 are separated by 106 nucleotidesAtu5187 and Atu5188 are separated by 194 nucleotides Atu5185: Atu5185 - short chain dehydrogenase, at 181,939 to 182,703 Atu5185 Atu5186: Atu5186 - hypothetical protein, at 182,684 to 182,869 Atu5186 Atu5187: Atu5187 - LysR family transcriptional regulator, at 182,976 to 183,902 Atu5187 Atu5188: Atu5188 - zinc-binding dehydrogenase, at 184,097 to 185,083 Atu5188 Position (kb) 182 183 184Strain fitness (log2 ratio) -2 -1 0 1 2 3at 181.988 kb on + strandat 182.059 kb on - strand, within Atu5185at 182.059 kb on - strand, within Atu5185at 182.091 kb on + strand, within Atu5185at 182.099 kb on - strand, within Atu5185at 182.139 kb on + strand, within Atu5185at 182.147 kb on - strand, within Atu5185at 182.205 kb on + strand, within Atu5185at 182.338 kb on + strand, within Atu5185at 182.346 kb on - strand, within Atu5185at 182.348 kb on + strand, within Atu5185at 182.407 kb on - strand, within Atu5185at 182.498 kb on + strand, within Atu5185at 182.500 kb on - strand, within Atu5185at 182.533 kb on + strand, within Atu5185at 182.533 kb on + strand, within Atu5185at 182.541 kb on - strand, within Atu5185at 182.541 kb on - strand, within Atu5185at 182.541 kb on - strand, within Atu5185at 182.541 kb on - strand, within Atu5185at 182.574 kb on - strand, within Atu5185at 182.665 kb on + strandat 182.787 kb on - strand, within Atu5186at 182.851 kb on + strandat 182.958 kb on - strandat 182.985 kb on - strandat 182.987 kb on + strandat 183.007 kb on + strandat 183.024 kb on - strandat 183.072 kb on + strand, within Atu5187at 183.089 kb on + strand, within Atu5187at 183.113 kb on + strand, within Atu5187at 183.124 kb on - strand, within Atu5187at 183.195 kb on + strand, within Atu5187at 183.236 kb on + strand, within Atu5187at 183.236 kb on + strand, within Atu5187at 183.238 kb on + strand, within Atu5187at 183.244 kb on - strand, within Atu5187at 183.246 kb on - strand, within Atu5187at 183.345 kb on - strand, within Atu5187at 183.469 kb on + strand, within Atu5187at 183.469 kb on + strand, within Atu5187at 183.471 kb on + strand, within Atu5187at 183.472 kb on - strand, within Atu5187at 183.472 kb on - strand, within Atu5187at 183.509 kb on + strand, within Atu5187at 183.554 kb on - strand, within Atu5187at 183.567 kb on - strand, within Atu5187at 183.630 kb on + strand, within Atu5187at 183.714 kb on + strand, within Atu5187at 183.800 kb on - strand, within Atu5187at 183.824 kb on + strandat 183.839 kb on + strandat 183.839 kb on + strandat 183.860 kb on + strandat 183.866 kb on - strandat 183.881 kb on + strandat 184.128 kb on + strandat 184.128 kb on + strandat 184.136 kb on - strandat 184.137 kb on + strandat 184.203 kb on - strand, within Atu5188at 184.203 kb on - strand, within Atu5188at 184.281 kb on + strand, within Atu5188at 184.297 kb on - strand, within Atu5188at 184.361 kb on + strand, within Atu5188at 184.369 kb on - strand, within Atu5188at 184.514 kb on + strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.522 kb on - strand, within Atu5188at 184.568 kb on - strand, within Atu5188at 184.599 kb on + strand, within Atu5188at 184.606 kb on + strand, within Atu5188at 184.607 kb on - strand, within Atu5188at 184.607 kb on - strand, within Atu5188at 184.736 kb on - strand, within Atu5188at 184.764 kb on + strand, within Atu5188at 184.784 kb on - strand, within Atu5188at 184.784 kb on - strand, within Atu5188at 184.897 kb on - strand, within Atu5188at 184.897 kb on - strand, within Atu5188

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanolamine (N)
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181,988 + +1.2
182,059 - Atu5185 0.16 +0.3
182,059 - Atu5185 0.16 -1.3
182,091 + Atu5185 0.20 -0.8
182,099 - Atu5185 0.21 -0.4
182,139 + Atu5185 0.26 +0.3
182,147 - Atu5185 0.27 -0.4
182,205 + Atu5185 0.35 -0.4
182,338 + Atu5185 0.52 -1.0
182,346 - Atu5185 0.53 +0.4
182,348 + Atu5185 0.53 +0.3
182,407 - Atu5185 0.61 +0.5
182,498 + Atu5185 0.73 +0.7
182,500 - Atu5185 0.73 +2.9
182,533 + Atu5185 0.78 -0.5
182,533 + Atu5185 0.78 +0.4
182,541 - Atu5185 0.79 +0.1
182,541 - Atu5185 0.79 -0.1
182,541 - Atu5185 0.79 -0.4
182,541 - Atu5185 0.79 -1.5
182,574 - Atu5185 0.83 -0.0
182,665 + -0.6
182,787 - Atu5186 0.55 -0.7
182,851 + +1.0
182,958 - +0.3
182,985 - +0.7
182,987 + +0.1
183,007 + -1.1
183,024 - -0.4
183,072 + Atu5187 0.10 +0.2
183,089 + Atu5187 0.12 +0.0
183,113 + Atu5187 0.15 +0.8
183,124 - Atu5187 0.16 +0.2
183,195 + Atu5187 0.24 -0.1
183,236 + Atu5187 0.28 +1.4
183,236 + Atu5187 0.28 +1.9
183,238 + Atu5187 0.28 -1.2
183,244 - Atu5187 0.29 -1.3
183,246 - Atu5187 0.29 -0.3
183,345 - Atu5187 0.40 -0.1
183,469 + Atu5187 0.53 -0.8
183,469 + Atu5187 0.53 -0.5
183,471 + Atu5187 0.53 +0.1
183,472 - Atu5187 0.54 +0.1
183,472 - Atu5187 0.54 -0.6
183,509 + Atu5187 0.57 +0.1
183,554 - Atu5187 0.62 +0.6
183,567 - Atu5187 0.64 -0.3
183,630 + Atu5187 0.71 -0.3
183,714 + Atu5187 0.80 -0.6
183,800 - Atu5187 0.89 -0.1
183,824 + -0.7
183,839 + -2.4
183,839 + -0.7
183,860 + +0.4
183,866 - +0.9
183,881 + +1.1
184,128 + -0.1
184,128 + +0.5
184,136 - +0.9
184,137 + -0.2
184,203 - Atu5188 0.11 +1.5
184,203 - Atu5188 0.11 +0.4
184,281 + Atu5188 0.19 -0.5
184,297 - Atu5188 0.20 +1.4
184,361 + Atu5188 0.27 +1.5
184,369 - Atu5188 0.28 +1.9
184,514 + Atu5188 0.42 -0.2
184,522 - Atu5188 0.43 +2.5
184,522 - Atu5188 0.43 -0.3
184,522 - Atu5188 0.43 +0.7
184,522 - Atu5188 0.43 -1.3
184,568 - Atu5188 0.48 +0.1
184,599 + Atu5188 0.51 +0.5
184,606 + Atu5188 0.52 +1.1
184,607 - Atu5188 0.52 +1.1
184,607 - Atu5188 0.52 +0.7
184,736 - Atu5188 0.65 -0.1
184,764 + Atu5188 0.68 +0.8
184,784 - Atu5188 0.70 +0.8
184,784 - Atu5188 0.70 -0.2
184,897 - Atu5188 0.81 -2.2
184,897 - Atu5188 0.81 +1.3

Or see this region's nucleotide sequence