Strain Fitness in Pseudomonas simiae WCS417 around PS417_23120

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23110 and PS417_23115 are separated by 176 nucleotidesPS417_23115 and PS417_23120 overlap by 13 nucleotidesPS417_23120 and PS417_23125 are separated by 114 nucleotides PS417_23110: PS417_23110 - 2-isopropylmalate synthase, at 5,008,765 to 5,010,444 _23110 PS417_23115: PS417_23115 - carbon-nitrogen hydrolase, at 5,010,621 to 5,011,412 _23115 PS417_23120: PS417_23120 - aminotransferase, at 5,011,400 to 5,012,548 _23120 PS417_23125: PS417_23125 - GTP-binding protein, at 5,012,663 to 5,014,132 _23125 Position (kb) 5011 5012 5013Strain fitness (log2 ratio) -1 0 1at 5010.458 kb on + strandat 5010.502 kb on - strandat 5010.561 kb on + strandat 5010.638 kb on + strandat 5010.829 kb on + strand, within PS417_23115at 5010.829 kb on + strand, within PS417_23115at 5010.965 kb on - strand, within PS417_23115at 5011.174 kb on + strand, within PS417_23115at 5011.175 kb on - strand, within PS417_23115at 5011.216 kb on + strand, within PS417_23115at 5011.412 kb on + strandat 5011.497 kb on + strandat 5011.590 kb on + strand, within PS417_23120at 5011.609 kb on - strand, within PS417_23120at 5011.628 kb on - strand, within PS417_23120at 5011.776 kb on + strand, within PS417_23120at 5011.776 kb on + strand, within PS417_23120at 5011.776 kb on + strand, within PS417_23120at 5011.777 kb on - strand, within PS417_23120at 5011.777 kb on - strand, within PS417_23120at 5011.827 kb on + strand, within PS417_23120at 5011.828 kb on - strand, within PS417_23120at 5011.854 kb on + strand, within PS417_23120at 5011.854 kb on + strand, within PS417_23120at 5011.855 kb on - strand, within PS417_23120at 5011.940 kb on + strand, within PS417_23120at 5011.974 kb on + strand, within PS417_23120at 5011.974 kb on + strand, within PS417_23120at 5011.975 kb on - strand, within PS417_23120at 5012.184 kb on + strand, within PS417_23120at 5012.184 kb on + strand, within PS417_23120at 5012.184 kb on + strand, within PS417_23120at 5012.185 kb on - strand, within PS417_23120at 5012.185 kb on - strand, within PS417_23120at 5012.185 kb on - strand, within PS417_23120at 5012.185 kb on - strand, within PS417_23120at 5012.185 kb on - strand, within PS417_23120at 5012.193 kb on + strand, within PS417_23120at 5012.194 kb on - strand, within PS417_23120at 5012.580 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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5,010,458 + -0.2
5,010,502 - -0.1
5,010,561 + +0.4
5,010,638 + -0.4
5,010,829 + PS417_23115 0.26 +0.2
5,010,829 + PS417_23115 0.26 -0.5
5,010,965 - PS417_23115 0.43 +0.9
5,011,174 + PS417_23115 0.70 -0.1
5,011,175 - PS417_23115 0.70 -0.2
5,011,216 + PS417_23115 0.75 +0.1
5,011,412 + +0.2
5,011,497 + -0.2
5,011,590 + PS417_23120 0.17 -0.1
5,011,609 - PS417_23120 0.18 -0.1
5,011,628 - PS417_23120 0.20 +0.4
5,011,776 + PS417_23120 0.33 +0.2
5,011,776 + PS417_23120 0.33 -0.1
5,011,776 + PS417_23120 0.33 -0.6
5,011,777 - PS417_23120 0.33 +0.3
5,011,777 - PS417_23120 0.33 -0.1
5,011,827 + PS417_23120 0.37 -0.2
5,011,828 - PS417_23120 0.37 -0.1
5,011,854 + PS417_23120 0.40 +1.3
5,011,854 + PS417_23120 0.40 -0.2
5,011,855 - PS417_23120 0.40 -0.3
5,011,940 + PS417_23120 0.47 -0.9
5,011,974 + PS417_23120 0.50 +0.1
5,011,974 + PS417_23120 0.50 +0.1
5,011,975 - PS417_23120 0.50 -0.1
5,012,184 + PS417_23120 0.68 +0.5
5,012,184 + PS417_23120 0.68 -0.1
5,012,184 + PS417_23120 0.68 +0.8
5,012,185 - PS417_23120 0.68 -0.1
5,012,185 - PS417_23120 0.68 +1.1
5,012,185 - PS417_23120 0.68 +0.5
5,012,185 - PS417_23120 0.68 +0.0
5,012,185 - PS417_23120 0.68 -0.1
5,012,193 + PS417_23120 0.69 -0.5
5,012,194 - PS417_23120 0.69 +0.3
5,012,580 - +0.5

Or see this region's nucleotide sequence