Strain Fitness in Pseudomonas simiae WCS417 around PS417_18535

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18530 and PS417_18535 are separated by 65 nucleotidesPS417_18535 and PS417_18540 are separated by 41 nucleotidesPS417_18540 and PS417_18545 are separated by 257 nucleotides PS417_18530: PS417_18530 - O-succinylhomoserine sulfhydrylase, at 4,023,150 to 4,024,361 _18530 PS417_18535: PS417_18535 - amidophosphoribosyltransferase, at 4,024,427 to 4,025,932 _18535 PS417_18540: PS417_18540 - colicin V production CvpA, at 4,025,974 to 4,026,531 _18540 PS417_18545: PS417_18545 - cell division protein, at 4,026,789 to 4,027,451 _18545 Position (kb) 4024 4025 4026Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4023.937 kb on + strand, within PS417_18530at 4023.937 kb on + strand, within PS417_18530at 4023.937 kb on + strand, within PS417_18530at 4024.152 kb on - strand, within PS417_18530at 4024.152 kb on - strand, within PS417_18530at 4024.162 kb on + strand, within PS417_18530at 4024.162 kb on + strand, within PS417_18530at 4024.226 kb on - strand, within PS417_18530at 4024.311 kb on + strandat 4024.311 kb on + strandat 4024.312 kb on - strandat 4024.312 kb on - strandat 4025.976 kb on - strandat 4026.101 kb on - strand, within PS417_18540at 4026.259 kb on + strand, within PS417_18540at 4026.260 kb on - strand, within PS417_18540at 4026.279 kb on - strand, within PS417_18540at 4026.363 kb on - strand, within PS417_18540at 4026.523 kb on - strandat 4026.684 kb on + strandat 4026.931 kb on + strand, within PS417_18545

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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4,023,937 + PS417_18530 0.65 -4.7
4,023,937 + PS417_18530 0.65 -4.2
4,023,937 + PS417_18530 0.65 -2.7
4,024,152 - PS417_18530 0.83 -4.8
4,024,152 - PS417_18530 0.83 -5.1
4,024,162 + PS417_18530 0.83 -3.6
4,024,162 + PS417_18530 0.83 -4.2
4,024,226 - PS417_18530 0.89 -2.1
4,024,311 + -3.8
4,024,311 + -5.9
4,024,312 - -4.2
4,024,312 - -4.6
4,025,976 - -0.2
4,026,101 - PS417_18540 0.23 -0.2
4,026,259 + PS417_18540 0.51 -1.9
4,026,260 - PS417_18540 0.51 -0.1
4,026,279 - PS417_18540 0.55 +1.3
4,026,363 - PS417_18540 0.70 -0.7
4,026,523 - -1.6
4,026,684 + -1.0
4,026,931 + PS417_18545 0.21 +0.4

Or see this region's nucleotide sequence