Strain Fitness in Pseudomonas simiae WCS417 around PS417_12905

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12895 and PS417_12900 are separated by 77 nucleotidesPS417_12900 and PS417_12905 are separated by 100 nucleotidesPS417_12905 and PS417_12910 are separated by 286 nucleotides PS417_12895: PS417_12895 - pyruvate dehydrogenase, at 2,819,736 to 2,822,402 _12895 PS417_12900: PS417_12900 - Fe-S protein, at 2,822,480 to 2,822,968 _12900 PS417_12905: PS417_12905 - ribonucleotide-diphosphate reductase subunit beta, at 2,823,069 to 2,824,319 _12905 PS417_12910: PS417_12910 - alanine racemase, at 2,824,606 to 2,825,703 _12910 Position (kb) 2823 2824 2825Strain fitness (log2 ratio) -2 -1 0 1 2at 2822.151 kb on + strandat 2822.151 kb on + strandat 2822.152 kb on - strandat 2822.184 kb on + strandat 2822.184 kb on + strandat 2822.185 kb on - strandat 2822.185 kb on - strandat 2822.185 kb on - strandat 2822.185 kb on - strandat 2822.538 kb on + strand, within PS417_12900at 2822.538 kb on + strand, within PS417_12900at 2822.538 kb on + strand, within PS417_12900at 2822.538 kb on + strand, within PS417_12900at 2822.539 kb on - strand, within PS417_12900at 2822.692 kb on - strand, within PS417_12900at 2822.980 kb on - strandat 2823.063 kb on + strandat 2823.101 kb on - strandat 2824.325 kb on + strandat 2824.388 kb on - strandat 2824.388 kb on - strandat 2824.390 kb on + strandat 2824.390 kb on + strandat 2824.391 kb on - strandat 2824.403 kb on - strandat 2824.423 kb on + strandat 2824.434 kb on - strandat 2824.443 kb on + strandat 2824.444 kb on - strandat 2824.444 kb on - strandat 2824.448 kb on - strandat 2824.448 kb on - strandat 2824.475 kb on + strandat 2824.475 kb on + strandat 2824.475 kb on + strandat 2824.476 kb on - strandat 2824.476 kb on - strandat 2824.476 kb on - strandat 2824.476 kb on - strandat 2824.476 kb on - strandat 2824.477 kb on + strandat 2824.477 kb on + strandat 2824.477 kb on + strandat 2824.477 kb on + strandat 2824.478 kb on - strandat 2824.478 kb on - strandat 2824.604 kb on + strandat 2824.605 kb on - strandat 2824.630 kb on + strandat 2824.631 kb on - strandat 2824.636 kb on + strandat 2824.636 kb on + strandat 2824.636 kb on + strandat 2824.664 kb on + strandat 2824.987 kb on + strand, within PS417_12910at 2824.988 kb on - strand, within PS417_12910at 2825.009 kb on - strand, within PS417_12910at 2825.009 kb on - strand, within PS417_12910at 2825.009 kb on - strand, within PS417_12910at 2825.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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2,822,151 + -0.6
2,822,151 + -0.0
2,822,152 - +0.2
2,822,184 + -0.3
2,822,184 + -0.2
2,822,185 - -0.0
2,822,185 - +0.9
2,822,185 - +0.1
2,822,185 - -0.2
2,822,538 + PS417_12900 0.12 -0.1
2,822,538 + PS417_12900 0.12 +0.3
2,822,538 + PS417_12900 0.12 -0.8
2,822,538 + PS417_12900 0.12 -0.1
2,822,539 - PS417_12900 0.12 -1.5
2,822,692 - PS417_12900 0.43 +0.7
2,822,980 - +1.2
2,823,063 + +0.4
2,823,101 - +0.1
2,824,325 + +0.0
2,824,388 - -0.2
2,824,388 - -0.6
2,824,390 + +0.2
2,824,390 + +0.4
2,824,391 - +0.2
2,824,403 - -0.1
2,824,423 + +0.4
2,824,434 - +0.1
2,824,443 + -0.2
2,824,444 - -0.2
2,824,444 - -0.3
2,824,448 - +0.6
2,824,448 - +0.9
2,824,475 + +0.3
2,824,475 + -0.6
2,824,475 + +0.0
2,824,476 - -0.6
2,824,476 - +1.4
2,824,476 - +0.8
2,824,476 - -0.2
2,824,476 - +0.4
2,824,477 + +0.3
2,824,477 + -0.6
2,824,477 + -1.8
2,824,477 + -0.3
2,824,478 - +0.8
2,824,478 - +1.6
2,824,604 + -0.3
2,824,605 - +0.5
2,824,630 + -0.2
2,824,631 - +0.2
2,824,636 + +2.2
2,824,636 + -0.2
2,824,636 + +0.3
2,824,664 + -2.4
2,824,987 + PS417_12910 0.35 +0.8
2,824,988 - PS417_12910 0.35 +0.1
2,825,009 - PS417_12910 0.37 +0.7
2,825,009 - PS417_12910 0.37 +0.3
2,825,009 - PS417_12910 0.37 +0.3
2,825,009 - +0.4

Or see this region's nucleotide sequence