Strain Fitness in Pseudomonas simiae WCS417 around PS417_09055

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09050 and PS417_09055 are separated by 259 nucleotidesPS417_09055 and PS417_09060 are separated by 140 nucleotides PS417_09050: PS417_09050 - transcriptional regulator, at 1,970,024 to 1,970,788 _09050 PS417_09055: PS417_09055 - orotidine 5'-phosphate decarboxylase, at 1,971,048 to 1,971,746 _09055 PS417_09060: PS417_09060 - NADP-dependent oxidoreductase, at 1,971,887 to 1,972,894 _09060 Position (kb) 1971 1972Strain fitness (log2 ratio) -1 0 1 2at 1970.053 kb on - strandat 1970.053 kb on - strandat 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strandat 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.425 kb on + strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.426 kb on - strand, within PS417_09050at 1970.427 kb on + strand, within PS417_09050at 1970.427 kb on + strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strand, within PS417_09050at 1970.428 kb on - strandat 1970.914 kb on - strandat 1970.914 kb on - strandat 1970.965 kb on + strandat 1970.969 kb on + strandat 1970.969 kb on + strandat 1971.006 kb on + strandat 1971.868 kb on + strandat 1972.107 kb on + strand, within PS417_09060at 1972.107 kb on + strand, within PS417_09060at 1972.108 kb on - strand, within PS417_09060at 1972.236 kb on + strand, within PS417_09060at 1972.237 kb on - strand, within PS417_09060at 1972.488 kb on + strand, within PS417_09060at 1972.560 kb on + strand, within PS417_09060at 1972.561 kb on - strand, within PS417_09060at 1972.618 kb on - strand, within PS417_09060at 1972.618 kb on - strand, within PS417_09060at 1972.711 kb on - strand, within PS417_09060at 1972.711 kb on - strand, within PS417_09060at 1972.711 kb on - strand, within PS417_09060at 1972.711 kb on - strand, within PS417_09060

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,970,053 - +1.2
1,970,053 - +0.1
1,970,425 + PS417_09050 0.52 -0.2
1,970,425 + PS417_09050 0.52 +0.1
1,970,425 + -0.2
1,970,425 + PS417_09050 0.52 +0.1
1,970,425 + PS417_09050 0.52 -0.6
1,970,425 + PS417_09050 0.52 -0.3
1,970,425 + PS417_09050 0.52 +0.1
1,970,426 - PS417_09050 0.53 +0.4
1,970,426 - PS417_09050 0.53 +1.6
1,970,426 - PS417_09050 0.53 +0.7
1,970,426 - PS417_09050 0.53 -0.2
1,970,426 - PS417_09050 0.53 -0.1
1,970,426 - PS417_09050 0.53 -0.1
1,970,426 - PS417_09050 0.53 -0.2
1,970,426 - PS417_09050 0.53 +0.6
1,970,426 - PS417_09050 0.53 +0.8
1,970,427 + PS417_09050 0.53 -0.7
1,970,427 + PS417_09050 0.53 -0.4
1,970,428 - PS417_09050 0.53 +0.6
1,970,428 - PS417_09050 0.53 +0.0
1,970,428 - PS417_09050 0.53 +0.3
1,970,428 - PS417_09050 0.53 +0.2
1,970,428 - -0.8
1,970,914 - +1.9
1,970,914 - +0.0
1,970,965 + -0.1
1,970,969 + -0.8
1,970,969 + -0.7
1,971,006 + +0.1
1,971,868 + +0.2
1,972,107 + PS417_09060 0.22 +0.0
1,972,107 + PS417_09060 0.22 +0.4
1,972,108 - PS417_09060 0.22 -1.4
1,972,236 + PS417_09060 0.35 +0.4
1,972,237 - PS417_09060 0.35 -0.0
1,972,488 + PS417_09060 0.60 -0.6
1,972,560 + PS417_09060 0.67 +0.1
1,972,561 - PS417_09060 0.67 -0.5
1,972,618 - PS417_09060 0.73 +0.1
1,972,618 - PS417_09060 0.73 +0.2
1,972,711 - PS417_09060 0.82 -0.0
1,972,711 - PS417_09060 0.82 +0.3
1,972,711 - PS417_09060 0.82 -0.2
1,972,711 - PS417_09060 0.82 -0.1

Or see this region's nucleotide sequence