Strain Fitness in Pseudomonas simiae WCS417 around PS417_06735

Experiment: L-Tryptophan (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_06730 and PS417_06735 are separated by 10 nucleotidesPS417_06735 and PS417_06740 are separated by 10 nucleotidesPS417_06740 and PS417_06745 are separated by 133 nucleotides PS417_06730: PS417_06730 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,490,121 to 1,491,476 _06730 PS417_06735: PS417_06735 - 3-oxoadipate enol-lactonase, at 1,491,487 to 1,492,278 _06735 PS417_06740: PS417_06740 - 4-carboxymuconolactone decarboxylase, at 1,492,289 to 1,492,687 _06740 PS417_06745: PS417_06745 - polysaccharide deacetylase, at 1,492,821 to 1,493,720 _06745 Position (kb) 1491 1492 1493Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1490.586 kb on - strand, within PS417_06730at 1491.145 kb on + strand, within PS417_06730at 1491.497 kb on + strandat 1491.497 kb on + strandat 1491.497 kb on + strandat 1491.923 kb on + strand, within PS417_06735at 1492.058 kb on + strand, within PS417_06735at 1492.175 kb on + strand, within PS417_06735at 1492.201 kb on + strandat 1492.201 kb on + strandat 1492.202 kb on - strandat 1492.202 kb on - strandat 1492.695 kb on + strandat 1492.745 kb on - strandat 1492.745 kb on - strandat 1492.815 kb on + strandat 1492.937 kb on - strand, within PS417_06745at 1492.999 kb on + strand, within PS417_06745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
remove
1,490,586 - PS417_06730 0.34 -4.1
1,491,145 + PS417_06730 0.76 -0.2
1,491,497 + -4.6
1,491,497 + -1.9
1,491,497 + -3.0
1,491,923 + PS417_06735 0.55 -3.9
1,492,058 + PS417_06735 0.72 -3.6
1,492,175 + PS417_06735 0.87 -0.8
1,492,201 + -3.9
1,492,201 + -3.1
1,492,202 - -2.5
1,492,202 - -5.9
1,492,695 + -1.3
1,492,745 - +0.1
1,492,745 - +0.3
1,492,815 + -1.0
1,492,937 - PS417_06745 0.13 +0.4
1,492,999 + PS417_06745 0.20 +0.6

Or see this region's nucleotide sequence