Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0764

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0763 and Echvi_0764 are separated by 104 nucleotidesEchvi_0764 and Echvi_0765 are separated by 225 nucleotides Echvi_0763: Echvi_0763 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 855,579 to 856,421 _0763 Echvi_0764: Echvi_0764 - Small-conductance mechanosensitive channel, at 856,526 to 857,575 _0764 Echvi_0765: Echvi_0765 - Carbon starvation protein, predicted membrane protein, at 857,801 to 859,435 _0765 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 856.475 kb on - strandat 856.475 kb on - strandat 856.475 kb on - strandat 856.475 kb on - strandat 856.489 kb on - strandat 856.489 kb on - strandat 856.501 kb on - strandat 856.603 kb on + strandat 856.604 kb on - strandat 856.605 kb on + strandat 856.605 kb on + strandat 856.605 kb on + strandat 856.606 kb on - strandat 856.606 kb on - strandat 856.682 kb on + strand, within Echvi_0764at 856.683 kb on - strand, within Echvi_0764at 856.683 kb on - strand, within Echvi_0764at 856.683 kb on - strand, within Echvi_0764at 856.727 kb on + strand, within Echvi_0764at 856.727 kb on + strand, within Echvi_0764at 856.727 kb on + strand, within Echvi_0764at 856.750 kb on + strand, within Echvi_0764at 856.750 kb on + strand, within Echvi_0764at 856.751 kb on - strand, within Echvi_0764at 856.751 kb on - strand, within Echvi_0764at 856.782 kb on - strand, within Echvi_0764at 856.814 kb on + strand, within Echvi_0764at 856.814 kb on + strand, within Echvi_0764at 856.820 kb on + strand, within Echvi_0764at 856.820 kb on + strand, within Echvi_0764at 856.821 kb on - strand, within Echvi_0764at 856.932 kb on + strand, within Echvi_0764at 856.932 kb on + strand, within Echvi_0764at 856.933 kb on - strand, within Echvi_0764at 856.933 kb on - strand, within Echvi_0764at 856.942 kb on + strand, within Echvi_0764at 856.993 kb on + strand, within Echvi_0764at 857.009 kb on - strand, within Echvi_0764at 857.074 kb on + strand, within Echvi_0764at 857.141 kb on - strand, within Echvi_0764at 857.180 kb on + strand, within Echvi_0764at 857.317 kb on + strand, within Echvi_0764at 857.352 kb on + strand, within Echvi_0764at 857.374 kb on + strand, within Echvi_0764at 857.374 kb on + strand, within Echvi_0764at 857.475 kb on + strandat 857.475 kb on + strandat 857.516 kb on + strandat 857.517 kb on - strandat 857.517 kb on - strandat 857.517 kb on - strandat 857.562 kb on - strandat 857.608 kb on + strandat 857.613 kb on + strandat 857.645 kb on - strandat 857.716 kb on - strandat 857.723 kb on - strandat 857.763 kb on + strandat 857.764 kb on - strandat 857.766 kb on + strandat 857.769 kb on - strandat 857.821 kb on - strandat 857.937 kb on + strandat 857.971 kb on - strand, within Echvi_0765at 858.094 kb on - strand, within Echvi_0765at 858.109 kb on + strand, within Echvi_0765at 858.109 kb on + strand, within Echvi_0765at 858.109 kb on + strand, within Echvi_0765at 858.136 kb on + strand, within Echvi_0765at 858.198 kb on + strand, within Echvi_0765at 858.198 kb on + strandat 858.199 kb on - strand, within Echvi_0765at 858.228 kb on + strand, within Echvi_0765at 858.228 kb on + strand, within Echvi_0765at 858.229 kb on - strand, within Echvi_0765at 858.334 kb on + strand, within Echvi_0765at 858.334 kb on + strand, within Echvi_0765at 858.342 kb on + strand, within Echvi_0765at 858.343 kb on - strand, within Echvi_0765at 858.398 kb on + strand, within Echvi_0765at 858.398 kb on + strand, within Echvi_0765at 858.398 kb on + strand, within Echvi_0765at 858.399 kb on - strand, within Echvi_0765at 858.402 kb on - strand, within Echvi_0765at 858.402 kb on - strand, within Echvi_0765at 858.402 kb on - strand, within Echvi_0765at 858.410 kb on + strand, within Echvi_0765at 858.411 kb on - strand, within Echvi_0765at 858.445 kb on + strand, within Echvi_0765at 858.445 kb on + strand, within Echvi_0765at 858.445 kb on + strand, within Echvi_0765at 858.446 kb on - strand, within Echvi_0765at 858.446 kb on - strand, within Echvi_0765at 858.458 kb on + strand, within Echvi_0765at 858.458 kb on + strand, within Echvi_0765at 858.474 kb on - strand, within Echvi_0765at 858.501 kb on + strand, within Echvi_0765at 858.502 kb on - strand, within Echvi_0765at 858.513 kb on + strand, within Echvi_0765at 858.514 kb on - strand, within Echvi_0765at 858.514 kb on - strand, within Echvi_0765at 858.514 kb on - strand, within Echvi_0765at 858.527 kb on + strand, within Echvi_0765at 858.532 kb on + strand, within Echvi_0765at 858.533 kb on - strand, within Echvi_0765at 858.533 kb on - strand, within Echvi_0765at 858.535 kb on + strand, within Echvi_0765at 858.536 kb on - strand, within Echvi_0765at 858.536 kb on - strand, within Echvi_0765at 858.548 kb on + strand, within Echvi_0765at 858.557 kb on - strand, within Echvi_0765

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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856,475 - -0.2
856,475 - -0.9
856,475 - -0.2
856,475 - -1.4
856,489 - +0.0
856,489 - +0.3
856,501 - +0.4
856,603 + -0.1
856,604 - +0.3
856,605 + +0.1
856,605 + -1.7
856,605 + -0.9
856,606 - +0.4
856,606 - -0.4
856,682 + Echvi_0764 0.15 +0.0
856,683 - Echvi_0764 0.15 -0.9
856,683 - Echvi_0764 0.15 +0.2
856,683 - Echvi_0764 0.15 +2.0
856,727 + Echvi_0764 0.19 +0.5
856,727 + Echvi_0764 0.19 +0.3
856,727 + Echvi_0764 0.19 +0.9
856,750 + Echvi_0764 0.21 -0.4
856,750 + Echvi_0764 0.21 +0.4
856,751 - Echvi_0764 0.21 +0.3
856,751 - Echvi_0764 0.21 +0.7
856,782 - Echvi_0764 0.24 +0.2
856,814 + Echvi_0764 0.27 +0.3
856,814 + Echvi_0764 0.27 -0.2
856,820 + Echvi_0764 0.28 +0.7
856,820 + Echvi_0764 0.28 -0.4
856,821 - Echvi_0764 0.28 +1.0
856,932 + Echvi_0764 0.39 +1.1
856,932 + Echvi_0764 0.39 +0.9
856,933 - Echvi_0764 0.39 +2.0
856,933 - Echvi_0764 0.39 +0.0
856,942 + Echvi_0764 0.40 +0.5
856,993 + Echvi_0764 0.44 +0.8
857,009 - Echvi_0764 0.46 +1.4
857,074 + Echvi_0764 0.52 +0.0
857,141 - Echvi_0764 0.59 -0.1
857,180 + Echvi_0764 0.62 +0.3
857,317 + Echvi_0764 0.75 +0.2
857,352 + Echvi_0764 0.79 +2.2
857,374 + Echvi_0764 0.81 +2.2
857,374 + Echvi_0764 0.81 -2.8
857,475 + -0.6
857,475 + +0.1
857,516 + -0.7
857,517 - -0.2
857,517 - +0.9
857,517 - +1.0
857,562 - +0.8
857,608 + +0.2
857,613 + +1.4
857,645 - -0.7
857,716 - -0.5
857,723 - -0.6
857,763 + +1.3
857,764 - -0.3
857,766 + +1.3
857,769 - +1.3
857,821 - -0.9
857,937 + +0.2
857,971 - Echvi_0765 0.10 -0.8
858,094 - Echvi_0765 0.18 -0.8
858,109 + Echvi_0765 0.19 +2.3
858,109 + Echvi_0765 0.19 +0.1
858,109 + Echvi_0765 0.19 -1.7
858,136 + Echvi_0765 0.20 -0.1
858,198 + Echvi_0765 0.24 +0.3
858,198 + +1.8
858,199 - Echvi_0765 0.24 -0.1
858,228 + Echvi_0765 0.26 +0.2
858,228 + Echvi_0765 0.26 +0.0
858,229 - Echvi_0765 0.26 -0.7
858,334 + Echvi_0765 0.33 -1.9
858,334 + Echvi_0765 0.33 +0.6
858,342 + Echvi_0765 0.33 -1.0
858,343 - Echvi_0765 0.33 +0.2
858,398 + Echvi_0765 0.37 -0.2
858,398 + Echvi_0765 0.37 +1.3
858,398 + Echvi_0765 0.37 -0.8
858,399 - Echvi_0765 0.37 -0.7
858,402 - Echvi_0765 0.37 -0.9
858,402 - Echvi_0765 0.37 +2.7
858,402 - Echvi_0765 0.37 -1.5
858,410 + Echvi_0765 0.37 +0.4
858,411 - Echvi_0765 0.37 +0.1
858,445 + Echvi_0765 0.39 +0.9
858,445 + Echvi_0765 0.39 -2.3
858,445 + Echvi_0765 0.39 -0.2
858,446 - Echvi_0765 0.39 -2.0
858,446 - Echvi_0765 0.39 +0.2
858,458 + Echvi_0765 0.40 -1.1
858,458 + Echvi_0765 0.40 -0.1
858,474 - Echvi_0765 0.41 -0.8
858,501 + Echvi_0765 0.43 -0.1
858,502 - Echvi_0765 0.43 -2.2
858,513 + Echvi_0765 0.44 -1.0
858,514 - Echvi_0765 0.44 +0.8
858,514 - Echvi_0765 0.44 +0.3
858,514 - Echvi_0765 0.44 -0.1
858,527 + Echvi_0765 0.44 +0.7
858,532 + Echvi_0765 0.45 +0.2
858,533 - Echvi_0765 0.45 +0.1
858,533 - Echvi_0765 0.45 -1.1
858,535 + Echvi_0765 0.45 +0.6
858,536 - Echvi_0765 0.45 -1.1
858,536 - Echvi_0765 0.45 -1.2
858,548 + Echvi_0765 0.46 -0.7
858,557 - Echvi_0765 0.46 -1.7

Or see this region's nucleotide sequence