Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0762

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0761 and Echvi_0762 are separated by 152 nucleotidesEchvi_0762 and Echvi_0763 are separated by 128 nucleotides Echvi_0761: Echvi_0761 - Arginase/agmatinase/formimionoglutamate hydrolase, arginase family, at 852,842 to 853,993 _0761 Echvi_0762: Echvi_0762 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit, at 854,146 to 855,450 _0762 Echvi_0763: Echvi_0763 - acetyl-CoA carboxylase, carboxyl transferase, beta subunit, at 855,579 to 856,421 _0763 Position (kb) 854 855 856Strain fitness (log2 ratio) -2 -1 0 1 2at 853.353 kb on - strand, within Echvi_0761at 853.373 kb on + strand, within Echvi_0761at 853.606 kb on - strand, within Echvi_0761at 853.698 kb on + strand, within Echvi_0761at 853.699 kb on - strand, within Echvi_0761at 853.906 kb on - strandat 853.931 kb on - strandat 853.994 kb on - strandat 855.484 kb on - strandat 855.484 kb on - strandat 855.484 kb on - strandat 855.484 kb on - strandat 855.486 kb on - strandat 855.486 kb on - strandat 855.486 kb on - strandat 855.498 kb on - strandat 855.519 kb on - strandat 855.519 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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853,353 - Echvi_0761 0.44 -0.2
853,373 + Echvi_0761 0.46 +0.0
853,606 - Echvi_0761 0.66 -0.2
853,698 + Echvi_0761 0.74 +2.7
853,699 - Echvi_0761 0.74 +1.3
853,906 - +1.3
853,931 - +2.3
853,994 - +0.3
855,484 - +1.5
855,484 - -1.9
855,484 - -0.3
855,484 - +1.4
855,486 - -0.8
855,486 - -1.5
855,486 - -1.5
855,498 - +1.0
855,519 - -0.7
855,519 - +0.6

Or see this region's nucleotide sequence