Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0369 and Echvi_0370 are separated by 82 nucleotides Echvi_0370 and Echvi_0371 are separated by 47 nucleotides Echvi_0371 and Echvi_0372 are separated by 166 nucleotides
Echvi_0369: Echvi_0369 - ATPases with chaperone activity, ATP-binding subunit, at 396,212 to 398,740
_0369
Echvi_0370: Echvi_0370 - WbqC-like protein family., at 398,823 to 399,452
_0370
Echvi_0371: Echvi_0371 - Sua5/YciO/YrdC/YwlC family protein, at 399,500 to 400,129
_0371
Echvi_0372: Echvi_0372 - conserved hypothetical protein, YceG family, at 400,296 to 401,339
_0372
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 398.936 kb on - strand, within Echvi_0370 at 398.936 kb on - strand, within Echvi_0370 at 398.954 kb on + strand, within Echvi_0370 at 399.016 kb on + strand, within Echvi_0370 at 399.247 kb on + strand, within Echvi_0370 at 399.270 kb on + strand, within Echvi_0370 at 399.312 kb on + strand, within Echvi_0370 at 399.326 kb on + strand, within Echvi_0370 at 399.331 kb on + strand, within Echvi_0370 at 399.368 kb on + strand, within Echvi_0370 at 399.388 kb on - strand, within Echvi_0370 at 399.405 kb on + strand at 399.479 kb on + strand at 399.489 kb on + strand at 399.489 kb on + strand at 399.559 kb on + strand at 399.586 kb on + strand, within Echvi_0371 at 399.586 kb on + strand, within Echvi_0371 at 399.663 kb on + strand, within Echvi_0371 at 399.663 kb on + strand, within Echvi_0371 at 399.731 kb on + strand, within Echvi_0371 at 399.734 kb on - strand, within Echvi_0371 at 399.734 kb on - strand, within Echvi_0371 at 399.743 kb on - strand, within Echvi_0371 at 399.743 kb on - strand, within Echvi_0371 at 399.745 kb on + strand, within Echvi_0371 at 399.746 kb on - strand, within Echvi_0371 at 399.791 kb on + strand, within Echvi_0371 at 399.823 kb on + strand, within Echvi_0371 at 399.889 kb on + strand, within Echvi_0371 at 399.890 kb on - strand, within Echvi_0371 at 399.891 kb on + strand, within Echvi_0371 at 399.900 kb on - strand, within Echvi_0371 at 399.902 kb on - strand, within Echvi_0371 at 399.902 kb on - strand, within Echvi_0371 at 399.915 kb on + strand, within Echvi_0371 at 399.950 kb on + strand, within Echvi_0371 at 399.997 kb on + strand, within Echvi_0371 at 399.997 kb on + strand, within Echvi_0371 at 399.997 kb on + strand, within Echvi_0371 at 400.033 kb on - strand, within Echvi_0371 at 400.059 kb on - strand, within Echvi_0371 at 400.077 kb on - strand at 400.156 kb on + strand at 400.156 kb on + strand at 400.156 kb on + strand at 400.156 kb on + strand at 400.156 kb on + strand at 400.156 kb on + strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.169 kb on - strand at 400.191 kb on + strand at 400.228 kb on + strand at 400.228 kb on + strand at 400.228 kb on + strand at 400.232 kb on + strand at 400.232 kb on + strand at 400.232 kb on + strand at 400.233 kb on - strand at 400.291 kb on + strand at 400.819 kb on - strand, within Echvi_0372 at 400.829 kb on + strand, within Echvi_0372 at 400.857 kb on + strand at 401.004 kb on + strand, within Echvi_0372 at 401.025 kb on - strand, within Echvi_0372 at 401.121 kb on + strand, within Echvi_0372
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 398,936 - Echvi_0370 0.18 -2.7 398,936 - Echvi_0370 0.18 -1.6 398,954 + Echvi_0370 0.21 -1.5 399,016 + Echvi_0370 0.31 -2.6 399,247 + Echvi_0370 0.67 -1.9 399,270 + Echvi_0370 0.71 +0.6 399,312 + Echvi_0370 0.78 +1.5 399,326 + Echvi_0370 0.80 +0.2 399,331 + Echvi_0370 0.81 +1.0 399,368 + Echvi_0370 0.87 +0.8 399,388 - Echvi_0370 0.90 -0.8 399,405 + -1.2 399,479 + +1.9 399,489 + +0.4 399,489 + +0.6 399,559 + -3.5 399,586 + Echvi_0371 0.14 +2.2 399,586 + Echvi_0371 0.14 +0.4 399,663 + Echvi_0371 0.26 -1.6 399,663 + Echvi_0371 0.26 +0.5 399,731 + Echvi_0371 0.37 +0.4 399,734 - Echvi_0371 0.37 -1.6 399,734 - Echvi_0371 0.37 +1.2 399,743 - Echvi_0371 0.39 -1.0 399,743 - Echvi_0371 0.39 +0.6 399,745 + Echvi_0371 0.39 -1.2 399,746 - Echvi_0371 0.39 +1.2 399,791 + Echvi_0371 0.46 +0.4 399,823 + Echvi_0371 0.51 -0.7 399,889 + Echvi_0371 0.62 -1.7 399,890 - Echvi_0371 0.62 +0.6 399,891 + Echvi_0371 0.62 +0.0 399,900 - Echvi_0371 0.63 +1.6 399,902 - Echvi_0371 0.64 -2.9 399,902 - Echvi_0371 0.64 -0.3 399,915 + Echvi_0371 0.66 -2.1 399,950 + Echvi_0371 0.71 -0.0 399,997 + Echvi_0371 0.79 +0.9 399,997 + Echvi_0371 0.79 +1.6 399,997 + Echvi_0371 0.79 +1.4 400,033 - Echvi_0371 0.85 -0.9 400,059 - Echvi_0371 0.89 +4.3 400,077 - +0.6 400,156 + +1.2 400,156 + -0.8 400,156 + +1.0 400,156 + +0.6 400,156 + +0.4 400,156 + +0.2 400,157 - -0.4 400,157 - -0.5 400,157 - -0.6 400,157 - -1.4 400,157 - +1.3 400,169 - +0.0 400,191 + +1.2 400,228 + +0.6 400,228 + -0.8 400,228 + -1.0 400,232 + -0.6 400,232 + +0.2 400,232 + -0.4 400,233 - +0.1 400,291 + +0.3 400,819 - Echvi_0372 0.50 -1.4 400,829 + Echvi_0372 0.51 -0.1 400,857 + +1.2 401,004 + Echvi_0372 0.68 -0.4 401,025 - Echvi_0372 0.70 -1.4 401,121 + Echvi_0372 0.79 +1.0
Or see this region's nucleotide sequence