Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0177

Experiment: Beta-Lactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0176 and Echvi_0177 overlap by 4 nucleotidesEchvi_0177 and Echvi_0178 are separated by 2 nucleotides Echvi_0176: Echvi_0176 - conserved repeat domain, at 191,926 to 193,527 _0176 Echvi_0177: Echvi_0177 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 193,524 to 195,848 _0177 Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819 _0178 Position (kb) 193 194 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 192.649 kb on + strand, within Echvi_0176at 192.661 kb on + strand, within Echvi_0176at 192.814 kb on + strand, within Echvi_0176at 192.814 kb on + strand, within Echvi_0176at 192.823 kb on + strand, within Echvi_0176at 192.833 kb on + strand, within Echvi_0176at 192.858 kb on + strand, within Echvi_0176at 192.858 kb on + strand, within Echvi_0176at 192.870 kb on + strand, within Echvi_0176at 192.918 kb on + strand, within Echvi_0176at 192.919 kb on - strand, within Echvi_0176at 192.923 kb on + strand, within Echvi_0176at 192.971 kb on + strand, within Echvi_0176at 192.971 kb on + strand, within Echvi_0176at 192.994 kb on + strand, within Echvi_0176at 192.996 kb on + strand, within Echvi_0176at 192.997 kb on - strand, within Echvi_0176at 193.005 kb on + strand, within Echvi_0176at 193.005 kb on + strand, within Echvi_0176at 193.006 kb on - strand, within Echvi_0176at 193.006 kb on - strand, within Echvi_0176at 193.008 kb on + strand, within Echvi_0176at 193.027 kb on + strand, within Echvi_0176at 193.045 kb on - strand, within Echvi_0176at 193.063 kb on + strand, within Echvi_0176at 193.064 kb on - strand, within Echvi_0176at 193.112 kb on - strand, within Echvi_0176at 193.125 kb on + strand, within Echvi_0176at 193.150 kb on + strand, within Echvi_0176at 193.150 kb on + strand, within Echvi_0176at 193.150 kb on + strand, within Echvi_0176at 193.151 kb on - strand, within Echvi_0176at 193.151 kb on - strand, within Echvi_0176at 193.188 kb on + strand, within Echvi_0176at 193.188 kb on + strand, within Echvi_0176at 193.189 kb on - strand, within Echvi_0176at 193.189 kb on - strand, within Echvi_0176at 193.191 kb on + strand, within Echvi_0176at 193.209 kb on + strand, within Echvi_0176at 193.209 kb on + strand, within Echvi_0176at 193.210 kb on - strand, within Echvi_0176at 193.210 kb on - strand, within Echvi_0176at 193.295 kb on + strand, within Echvi_0176at 193.335 kb on - strand, within Echvi_0176at 193.352 kb on - strand, within Echvi_0176at 193.352 kb on - strand, within Echvi_0176at 193.404 kb on + strandat 193.504 kb on + strandat 193.505 kb on - strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.517 kb on + strandat 193.517 kb on + strandat 193.517 kb on + strandat 193.518 kb on - strandat 193.518 kb on - strandat 193.518 kb on - strandat 193.522 kb on + strandat 193.542 kb on + strandat 193.543 kb on - strandat 193.638 kb on - strandat 193.666 kb on + strandat 193.667 kb on - strandat 193.667 kb on - strandat 193.707 kb on - strandat 193.791 kb on + strand, within Echvi_0177at 193.791 kb on + strand, within Echvi_0177at 193.792 kb on - strand, within Echvi_0177at 193.860 kb on + strand, within Echvi_0177at 193.860 kb on + strand, within Echvi_0177at 193.860 kb on + strand, within Echvi_0177at 193.861 kb on - strand, within Echvi_0177at 193.882 kb on + strand, within Echvi_0177at 194.071 kb on + strand, within Echvi_0177at 194.071 kb on + strand, within Echvi_0177at 194.117 kb on - strand, within Echvi_0177at 194.117 kb on - strand, within Echvi_0177at 194.178 kb on + strand, within Echvi_0177at 194.178 kb on + strand, within Echvi_0177at 194.251 kb on + strand, within Echvi_0177at 194.251 kb on + strand, within Echvi_0177at 194.251 kb on + strand, within Echvi_0177at 194.368 kb on + strand, within Echvi_0177at 194.444 kb on + strand, within Echvi_0177at 194.445 kb on - strand, within Echvi_0177at 194.454 kb on + strand, within Echvi_0177at 194.455 kb on - strand, within Echvi_0177at 194.513 kb on + strand, within Echvi_0177at 194.514 kb on - strand, within Echvi_0177at 194.563 kb on + strand, within Echvi_0177at 194.568 kb on - strand, within Echvi_0177at 194.591 kb on + strand, within Echvi_0177at 194.740 kb on + strand, within Echvi_0177at 194.819 kb on + strand, within Echvi_0177at 194.820 kb on - strand, within Echvi_0177at 194.870 kb on + strand, within Echvi_0177at 194.875 kb on + strand, within Echvi_0177at 194.875 kb on + strand, within Echvi_0177at 194.887 kb on + strand, within Echvi_0177at 194.888 kb on - strand, within Echvi_0177at 194.888 kb on - strand, within Echvi_0177at 194.932 kb on + strand, within Echvi_0177at 194.932 kb on + strand, within Echvi_0177at 194.959 kb on + strand, within Echvi_0177at 195.002 kb on - strand, within Echvi_0177at 195.008 kb on - strand, within Echvi_0177at 195.013 kb on + strand, within Echvi_0177at 195.013 kb on + strand, within Echvi_0177at 195.036 kb on - strand, within Echvi_0177at 195.036 kb on - strand, within Echvi_0177at 195.036 kb on - strand, within Echvi_0177at 195.046 kb on + strand, within Echvi_0177at 195.049 kb on + strand, within Echvi_0177at 195.050 kb on - strand, within Echvi_0177at 195.145 kb on - strand, within Echvi_0177at 195.170 kb on + strand, within Echvi_0177at 195.171 kb on - strand, within Echvi_0177at 195.200 kb on + strand, within Echvi_0177at 195.201 kb on - strand, within Echvi_0177at 195.215 kb on + strand, within Echvi_0177at 195.226 kb on + strand, within Echvi_0177at 195.234 kb on + strand, within Echvi_0177at 195.238 kb on + strand, within Echvi_0177at 195.239 kb on - strand, within Echvi_0177at 195.259 kb on + strand, within Echvi_0177at 195.260 kb on - strand, within Echvi_0177at 195.275 kb on - strand, within Echvi_0177at 195.300 kb on + strand, within Echvi_0177at 195.309 kb on + strand, within Echvi_0177at 195.310 kb on - strand, within Echvi_0177at 195.352 kb on + strand, within Echvi_0177at 195.357 kb on - strand, within Echvi_0177at 195.383 kb on + strand, within Echvi_0177at 195.384 kb on - strand, within Echvi_0177at 195.384 kb on - strand, within Echvi_0177at 195.410 kb on + strand, within Echvi_0177at 195.411 kb on - strand, within Echvi_0177at 195.459 kb on - strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.464 kb on + strand, within Echvi_0177at 195.465 kb on - strand, within Echvi_0177at 195.465 kb on - strand, within Echvi_0177at 195.465 kb on - strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.466 kb on + strand, within Echvi_0177at 195.476 kb on + strand, within Echvi_0177at 195.494 kb on + strand, within Echvi_0177at 195.519 kb on + strand, within Echvi_0177at 195.519 kb on + strand, within Echvi_0177at 195.600 kb on + strand, within Echvi_0177at 195.710 kb on + strandat 195.710 kb on + strandat 195.712 kb on + strandat 195.712 kb on + strandat 195.713 kb on - strandat 195.727 kb on - strandat 195.727 kb on - strandat 195.727 kb on - strandat 195.731 kb on + strandat 195.731 kb on + strandat 195.731 kb on + strandat 195.733 kb on + strandat 195.733 kb on + strandat 195.733 kb on + strandat 195.734 kb on - strandat 195.820 kb on - strandat 195.824 kb on + strandat 195.825 kb on - strandat 195.825 kb on - strandat 195.829 kb on - strandat 195.829 kb on - strandat 195.897 kb on + strandat 195.897 kb on + strandat 195.898 kb on - strandat 195.898 kb on - strandat 195.934 kb on + strandat 195.935 kb on - strandat 195.955 kb on + strand, within Echvi_0178at 195.955 kb on + strand, within Echvi_0178at 195.955 kb on + strand, within Echvi_0178at 195.956 kb on - strand, within Echvi_0178at 195.956 kb on - strand, within Echvi_0178at 195.963 kb on + strand, within Echvi_0178at 195.974 kb on + strand, within Echvi_0178at 195.974 kb on + strand, within Echvi_0178at 196.009 kb on + strand, within Echvi_0178at 196.107 kb on + strand, within Echvi_0178at 196.108 kb on - strand, within Echvi_0178at 196.139 kb on - strand, within Echvi_0178at 196.139 kb on - strand, within Echvi_0178at 196.228 kb on - strand, within Echvi_0178at 196.228 kb on - strand, within Echvi_0178at 196.246 kb on - strand, within Echvi_0178at 196.253 kb on + strand, within Echvi_0178at 196.279 kb on + strand, within Echvi_0178at 196.327 kb on + strand, within Echvi_0178at 196.327 kb on + strand, within Echvi_0178at 196.331 kb on - strand, within Echvi_0178at 196.343 kb on + strand, within Echvi_0178at 196.349 kb on + strand, within Echvi_0178at 196.349 kb on + strand, within Echvi_0178at 196.350 kb on - strand, within Echvi_0178at 196.350 kb on - strand, within Echvi_0178at 196.350 kb on - strand, within Echvi_0178at 196.354 kb on + strand, within Echvi_0178at 196.364 kb on + strand, within Echvi_0178at 196.406 kb on + strand, within Echvi_0178at 196.420 kb on + strand, within Echvi_0178at 196.426 kb on - strand, within Echvi_0178at 196.437 kb on + strand, within Echvi_0178at 196.506 kb on + strand, within Echvi_0178at 196.506 kb on + strand, within Echvi_0178at 196.507 kb on - strand, within Echvi_0178at 196.507 kb on - strand, within Echvi_0178at 196.507 kb on - strand, within Echvi_0178at 196.579 kb on + strand, within Echvi_0178at 196.656 kb on + strand, within Echvi_0178at 196.657 kb on - strand, within Echvi_0178at 196.672 kb on - strand, within Echvi_0178at 196.672 kb on - strand, within Echvi_0178at 196.672 kb on - strand, within Echvi_0178at 196.687 kb on - strand, within Echvi_0178at 196.687 kb on - strand, within Echvi_0178at 196.708 kb on + strand, within Echvi_0178at 196.709 kb on - strand, within Echvi_0178at 196.709 kb on - strand, within Echvi_0178at 196.724 kb on + strandat 196.726 kb on + strandat 196.726 kb on + strandat 196.727 kb on - strandat 196.728 kb on + strandat 196.728 kb on + strandat 196.729 kb on - strandat 196.766 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
remove
192,649 + Echvi_0176 0.45 -0.4
192,661 + Echvi_0176 0.46 -0.9
192,814 + Echvi_0176 0.55 -0.3
192,814 + Echvi_0176 0.55 +0.2
192,823 + Echvi_0176 0.56 -0.4
192,833 + Echvi_0176 0.57 -0.2
192,858 + Echvi_0176 0.58 -0.8
192,858 + Echvi_0176 0.58 -0.1
192,870 + Echvi_0176 0.59 +0.8
192,918 + Echvi_0176 0.62 +0.0
192,919 - Echvi_0176 0.62 +2.8
192,923 + Echvi_0176 0.62 +0.9
192,971 + Echvi_0176 0.65 +0.2
192,971 + Echvi_0176 0.65 +0.0
192,994 + Echvi_0176 0.67 +0.6
192,996 + Echvi_0176 0.67 +1.6
192,997 - Echvi_0176 0.67 -1.3
193,005 + Echvi_0176 0.67 -2.0
193,005 + Echvi_0176 0.67 +2.1
193,006 - Echvi_0176 0.67 -1.1
193,006 - Echvi_0176 0.67 -0.6
193,008 + Echvi_0176 0.68 +0.4
193,027 + Echvi_0176 0.69 -0.9
193,045 - Echvi_0176 0.70 +0.2
193,063 + Echvi_0176 0.71 -0.2
193,064 - Echvi_0176 0.71 +0.2
193,112 - Echvi_0176 0.74 -2.4
193,125 + Echvi_0176 0.75 -0.5
193,150 + Echvi_0176 0.76 -1.5
193,150 + Echvi_0176 0.76 +0.5
193,150 + Echvi_0176 0.76 +0.8
193,151 - Echvi_0176 0.76 +2.8
193,151 - Echvi_0176 0.76 -1.3
193,188 + Echvi_0176 0.79 -0.2
193,188 + Echvi_0176 0.79 -0.4
193,189 - Echvi_0176 0.79 -0.8
193,189 - Echvi_0176 0.79 +0.2
193,191 + Echvi_0176 0.79 +1.1
193,209 + Echvi_0176 0.80 +0.6
193,209 + Echvi_0176 0.80 +1.2
193,210 - Echvi_0176 0.80 +1.2
193,210 - Echvi_0176 0.80 -0.4
193,295 + Echvi_0176 0.85 -1.5
193,335 - Echvi_0176 0.88 +1.2
193,352 - Echvi_0176 0.89 +0.4
193,352 - Echvi_0176 0.89 +0.2
193,404 + +0.5
193,504 + -0.0
193,505 - +0.6
193,515 + -0.2
193,515 + +1.7
193,517 + +0.4
193,517 + -0.0
193,517 + -0.1
193,518 - -2.3
193,518 - -2.9
193,518 - +0.5
193,522 + -0.2
193,542 + -1.4
193,543 - -0.6
193,638 - -0.9
193,666 + -1.5
193,667 - -1.6
193,667 - -1.6
193,707 - +1.2
193,791 + Echvi_0177 0.11 -0.5
193,791 + Echvi_0177 0.11 +2.5
193,792 - Echvi_0177 0.12 -0.7
193,860 + Echvi_0177 0.14 +1.7
193,860 + Echvi_0177 0.14 +0.6
193,860 + Echvi_0177 0.14 +0.2
193,861 - Echvi_0177 0.14 -1.8
193,882 + Echvi_0177 0.15 +1.2
194,071 + Echvi_0177 0.24 -0.7
194,071 + Echvi_0177 0.24 -0.4
194,117 - Echvi_0177 0.26 -0.1
194,117 - Echvi_0177 0.26 +0.6
194,178 + Echvi_0177 0.28 +1.1
194,178 + Echvi_0177 0.28 -0.1
194,251 + Echvi_0177 0.31 -0.9
194,251 + Echvi_0177 0.31 -0.7
194,251 + Echvi_0177 0.31 -3.3
194,368 + Echvi_0177 0.36 -0.1
194,444 + Echvi_0177 0.40 +0.8
194,445 - Echvi_0177 0.40 -1.4
194,454 + Echvi_0177 0.40 -0.6
194,455 - Echvi_0177 0.40 -1.3
194,513 + Echvi_0177 0.43 +0.7
194,514 - Echvi_0177 0.43 -0.6
194,563 + Echvi_0177 0.45 +0.0
194,568 - Echvi_0177 0.45 -0.4
194,591 + Echvi_0177 0.46 -1.9
194,740 + Echvi_0177 0.52 +0.2
194,819 + Echvi_0177 0.56 -0.2
194,820 - Echvi_0177 0.56 -2.0
194,870 + Echvi_0177 0.58 +0.7
194,875 + Echvi_0177 0.58 -0.1
194,875 + Echvi_0177 0.58 -0.5
194,887 + Echvi_0177 0.59 -1.6
194,888 - Echvi_0177 0.59 +0.6
194,888 - Echvi_0177 0.59 -0.4
194,932 + Echvi_0177 0.61 +0.0
194,932 + Echvi_0177 0.61 -0.4
194,959 + Echvi_0177 0.62 -1.0
195,002 - Echvi_0177 0.64 -0.1
195,008 - Echvi_0177 0.64 -0.7
195,013 + Echvi_0177 0.64 +0.1
195,013 + Echvi_0177 0.64 +0.1
195,036 - Echvi_0177 0.65 -0.6
195,036 - Echvi_0177 0.65 +0.0
195,036 - Echvi_0177 0.65 +0.9
195,046 + Echvi_0177 0.65 -0.7
195,049 + Echvi_0177 0.66 -0.4
195,050 - Echvi_0177 0.66 -1.8
195,145 - Echvi_0177 0.70 -2.5
195,170 + Echvi_0177 0.71 -0.7
195,171 - Echvi_0177 0.71 -0.6
195,200 + Echvi_0177 0.72 -1.0
195,201 - Echvi_0177 0.72 -0.4
195,215 + Echvi_0177 0.73 -0.3
195,226 + Echvi_0177 0.73 +0.0
195,234 + Echvi_0177 0.74 -0.7
195,238 + Echvi_0177 0.74 -0.6
195,239 - Echvi_0177 0.74 -2.2
195,259 + Echvi_0177 0.75 -1.4
195,260 - Echvi_0177 0.75 +0.5
195,275 - Echvi_0177 0.75 -0.4
195,300 + Echvi_0177 0.76 +0.1
195,309 + Echvi_0177 0.77 +0.6
195,310 - Echvi_0177 0.77 +0.7
195,352 + Echvi_0177 0.79 +1.1
195,357 - Echvi_0177 0.79 +0.0
195,383 + Echvi_0177 0.80 +0.4
195,384 - Echvi_0177 0.80 -0.9
195,384 - Echvi_0177 0.80 -0.1
195,410 + Echvi_0177 0.81 +0.4
195,411 - Echvi_0177 0.81 +0.0
195,459 - Echvi_0177 0.83 -2.0
195,464 + Echvi_0177 0.83 -2.6
195,464 + Echvi_0177 0.83 +0.0
195,464 + Echvi_0177 0.83 -0.2
195,464 + Echvi_0177 0.83 -2.3
195,464 + Echvi_0177 0.83 +4.5
195,464 + Echvi_0177 0.83 -1.5
195,465 - Echvi_0177 0.83 -1.5
195,465 - Echvi_0177 0.83 +0.1
195,465 - Echvi_0177 0.83 -0.0
195,466 + Echvi_0177 0.84 -0.7
195,466 + Echvi_0177 0.84 -1.7
195,466 + Echvi_0177 0.84 +0.2
195,466 + Echvi_0177 0.84 -0.5
195,476 + Echvi_0177 0.84 -1.6
195,494 + Echvi_0177 0.85 -0.1
195,519 + Echvi_0177 0.86 +0.6
195,519 + Echvi_0177 0.86 +1.2
195,600 + Echvi_0177 0.89 +0.0
195,710 + +0.8
195,710 + -0.4
195,712 + +1.1
195,712 + -0.5
195,713 - +0.0
195,727 - +1.1
195,727 - +0.2
195,727 - -0.8
195,731 + -2.0
195,731 + -2.0
195,731 + -2.3
195,733 + -0.2
195,733 + -0.9
195,733 + +0.8
195,734 - -0.3
195,820 - -0.2
195,824 + -0.4
195,825 - -1.9
195,825 - -0.7
195,829 - -0.4
195,829 - -0.8
195,897 + -0.7
195,897 + -2.5
195,898 - -1.8
195,898 - -0.0
195,934 + +2.8
195,935 - -1.9
195,955 + Echvi_0178 0.11 +1.9
195,955 + Echvi_0178 0.11 -0.2
195,955 + Echvi_0178 0.11 +0.6
195,956 - Echvi_0178 0.11 -0.3
195,956 - Echvi_0178 0.11 -1.8
195,963 + Echvi_0178 0.12 -1.0
195,974 + Echvi_0178 0.13 +1.2
195,974 + Echvi_0178 0.13 -0.3
196,009 + Echvi_0178 0.16 +0.7
196,107 + Echvi_0178 0.26 -0.5
196,108 - Echvi_0178 0.27 -0.3
196,139 - Echvi_0178 0.30 -0.6
196,139 - Echvi_0178 0.30 -1.1
196,228 - Echvi_0178 0.39 +0.3
196,228 - Echvi_0178 0.39 +0.7
196,246 - Echvi_0178 0.41 +0.3
196,253 + Echvi_0178 0.41 +0.7
196,279 + Echvi_0178 0.44 +0.3
196,327 + Echvi_0178 0.49 +0.1
196,327 + Echvi_0178 0.49 -0.6
196,331 - Echvi_0178 0.50 +1.0
196,343 + Echvi_0178 0.51 +1.0
196,349 + Echvi_0178 0.51 -1.1
196,349 + Echvi_0178 0.51 -1.6
196,350 - Echvi_0178 0.51 -1.0
196,350 - Echvi_0178 0.51 +0.5
196,350 - Echvi_0178 0.51 +0.2
196,354 + Echvi_0178 0.52 +0.9
196,364 + Echvi_0178 0.53 +0.6
196,406 + Echvi_0178 0.57 -0.1
196,420 + Echvi_0178 0.59 -0.2
196,426 - Echvi_0178 0.59 +0.3
196,437 + Echvi_0178 0.60 -0.4
196,506 + Echvi_0178 0.68 +0.5
196,506 + Echvi_0178 0.68 +0.3
196,507 - Echvi_0178 0.68 -1.1
196,507 - Echvi_0178 0.68 -0.3
196,507 - Echvi_0178 0.68 +0.1
196,579 + Echvi_0178 0.75 -1.0
196,656 + Echvi_0178 0.83 -0.4
196,657 - Echvi_0178 0.83 +1.1
196,672 - Echvi_0178 0.85 -0.4
196,672 - Echvi_0178 0.85 -0.6
196,672 - Echvi_0178 0.85 -0.7
196,687 - Echvi_0178 0.86 -0.4
196,687 - Echvi_0178 0.86 -1.3
196,708 + Echvi_0178 0.88 -0.3
196,709 - Echvi_0178 0.89 -0.1
196,709 - Echvi_0178 0.89 +0.9
196,724 + -0.6
196,726 + -0.4
196,726 + -0.3
196,727 - -1.0
196,728 + -1.2
196,728 + -0.4
196,729 - +0.8
196,766 + -0.8

Or see this region's nucleotide sequence