Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0074 and Echvi_0075 are separated by 81 nucleotides Echvi_0075 and Echvi_0076 are separated by 2 nucleotides Echvi_0076 and Echvi_0077 are separated by 6 nucleotides
Echvi_0074: Echvi_0074 - Permeases of the major facilitator superfamily, at 76,379 to 77,677
_0074
Echvi_0075: Echvi_0075 - Biopolymer transport protein, at 77,759 to 78,226
_0075
Echvi_0076: Echvi_0076 - Biopolymer transport protein, at 78,229 to 78,861
_0076
Echvi_0077: Echvi_0077 - hypothetical protein, at 78,868 to 79,197
_0077
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.798 kb on + strand, within Echvi_0074 at 76.806 kb on - strand, within Echvi_0074 at 76.806 kb on - strand, within Echvi_0074 at 76.806 kb on - strand, within Echvi_0074 at 76.811 kb on + strand, within Echvi_0074 at 76.811 kb on + strand, within Echvi_0074 at 76.812 kb on - strand, within Echvi_0074 at 76.812 kb on - strand, within Echvi_0074 at 76.812 kb on - strand, within Echvi_0074 at 76.832 kb on + strand, within Echvi_0074 at 76.832 kb on + strand, within Echvi_0074 at 76.833 kb on - strand, within Echvi_0074 at 76.837 kb on + strand, within Echvi_0074 at 76.853 kb on + strand, within Echvi_0074 at 76.854 kb on - strand, within Echvi_0074 at 76.884 kb on + strand, within Echvi_0074 at 76.884 kb on + strand, within Echvi_0074 at 76.884 kb on + strand, within Echvi_0074 at 76.884 kb on + strand, within Echvi_0074 at 76.885 kb on - strand, within Echvi_0074 at 76.888 kb on + strand, within Echvi_0074 at 76.888 kb on + strand, within Echvi_0074 at 76.889 kb on - strand, within Echvi_0074 at 76.987 kb on + strand, within Echvi_0074 at 76.989 kb on + strand, within Echvi_0074 at 76.989 kb on + strand, within Echvi_0074 at 76.990 kb on - strand, within Echvi_0074 at 76.990 kb on - strand, within Echvi_0074 at 77.003 kb on + strand, within Echvi_0074 at 77.003 kb on + strand, within Echvi_0074 at 77.003 kb on + strand, within Echvi_0074 at 77.004 kb on - strand, within Echvi_0074 at 77.033 kb on - strand, within Echvi_0074 at 77.033 kb on - strand, within Echvi_0074 at 77.043 kb on - strand, within Echvi_0074 at 77.047 kb on - strand, within Echvi_0074 at 77.047 kb on - strand, within Echvi_0074 at 77.129 kb on + strand, within Echvi_0074 at 77.194 kb on + strand, within Echvi_0074 at 77.196 kb on + strand, within Echvi_0074 at 77.285 kb on - strand, within Echvi_0074 at 77.292 kb on + strand, within Echvi_0074 at 77.292 kb on + strand, within Echvi_0074 at 77.293 kb on - strand, within Echvi_0074 at 77.293 kb on - strand, within Echvi_0074 at 77.297 kb on + strand, within Echvi_0074 at 77.339 kb on - strand, within Echvi_0074 at 77.366 kb on - strand, within Echvi_0074 at 77.425 kb on - strand, within Echvi_0074 at 77.425 kb on - strand, within Echvi_0074 at 77.468 kb on + strand, within Echvi_0074 at 77.485 kb on + strand, within Echvi_0074 at 77.485 kb on + strand, within Echvi_0074 at 77.497 kb on - strand, within Echvi_0074 at 77.537 kb on + strand, within Echvi_0074 at 77.538 kb on - strand, within Echvi_0074 at 77.538 kb on - strand, within Echvi_0074 at 77.538 kb on - strand, within Echvi_0074 at 77.538 kb on - strand, within Echvi_0074 at 77.612 kb on - strand at 77.612 kb on - strand at 77.612 kb on - strand at 77.612 kb on - strand at 77.613 kb on + strand at 77.613 kb on + strand at 77.614 kb on - strand at 77.615 kb on + strand at 77.616 kb on - strand at 77.616 kb on - strand at 77.616 kb on - strand at 77.616 kb on - strand at 77.635 kb on - strand at 77.737 kb on - strand at 77.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 76,798 + Echvi_0074 0.32 -2.6 76,806 - Echvi_0074 0.33 +0.5 76,806 - Echvi_0074 0.33 -0.5 76,806 - Echvi_0074 0.33 -0.3 76,811 + Echvi_0074 0.33 +0.2 76,811 + Echvi_0074 0.33 +0.7 76,812 - Echvi_0074 0.33 +0.3 76,812 - Echvi_0074 0.33 +0.5 76,812 - Echvi_0074 0.33 -0.2 76,832 + Echvi_0074 0.35 -2.1 76,832 + Echvi_0074 0.35 +1.2 76,833 - Echvi_0074 0.35 -0.4 76,837 + Echvi_0074 0.35 +0.0 76,853 + Echvi_0074 0.36 -1.7 76,854 - Echvi_0074 0.37 -1.1 76,884 + Echvi_0074 0.39 -1.4 76,884 + Echvi_0074 0.39 +1.5 76,884 + Echvi_0074 0.39 +0.3 76,884 + Echvi_0074 0.39 -0.6 76,885 - Echvi_0074 0.39 +1.0 76,888 + Echvi_0074 0.39 +0.2 76,888 + Echvi_0074 0.39 -2.1 76,889 - Echvi_0074 0.39 +0.2 76,987 + Echvi_0074 0.47 -0.7 76,989 + Echvi_0074 0.47 -1.8 76,989 + Echvi_0074 0.47 -1.0 76,990 - Echvi_0074 0.47 +0.3 76,990 - Echvi_0074 0.47 +0.1 77,003 + Echvi_0074 0.48 -1.3 77,003 + Echvi_0074 0.48 -1.4 77,003 + Echvi_0074 0.48 +0.6 77,004 - Echvi_0074 0.48 -0.2 77,033 - Echvi_0074 0.50 -2.0 77,033 - Echvi_0074 0.50 -0.3 77,043 - Echvi_0074 0.51 -0.1 77,047 - Echvi_0074 0.51 +1.0 77,047 - Echvi_0074 0.51 -0.3 77,129 + Echvi_0074 0.58 +2.2 77,194 + Echvi_0074 0.63 -1.6 77,196 + Echvi_0074 0.63 +0.4 77,285 - Echvi_0074 0.70 -0.9 77,292 + Echvi_0074 0.70 -0.5 77,292 + Echvi_0074 0.70 -0.9 77,293 - Echvi_0074 0.70 +1.6 77,293 - Echvi_0074 0.70 -1.6 77,297 + Echvi_0074 0.71 -2.9 77,339 - Echvi_0074 0.74 +1.0 77,366 - Echvi_0074 0.76 +0.0 77,425 - Echvi_0074 0.81 -0.2 77,425 - Echvi_0074 0.81 -0.6 77,468 + Echvi_0074 0.84 +0.3 77,485 + Echvi_0074 0.85 +0.7 77,485 + Echvi_0074 0.85 +0.1 77,497 - Echvi_0074 0.86 -0.8 77,537 + Echvi_0074 0.89 -0.6 77,538 - Echvi_0074 0.89 -1.3 77,538 - Echvi_0074 0.89 -1.7 77,538 - Echvi_0074 0.89 -1.2 77,538 - Echvi_0074 0.89 -2.6 77,612 - +0.8 77,612 - -0.2 77,612 - -0.2 77,612 - -2.2 77,613 + -0.1 77,613 + -2.3 77,614 - +1.5 77,615 + +1.4 77,616 - -0.4 77,616 - -0.3 77,616 - +0.4 77,616 - +1.0 77,635 - +0.4 77,737 - -0.4 77,739 - -0.9
Or see this region's nucleotide sequence