Strain Fitness in Agrobacterium fabrum C58 around Atu5447

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5446 and Atu5447 are separated by 31 nucleotidesAtu5447 and Atu5448 are separated by 235 nucleotidesAtu5448 and Atu5449 are separated by 300 nucleotides Atu5446: Atu5446 - cultivar specificity protein W78, at 439,334 to 440,236 Atu5446 Atu5447: Atu5447 - zinc-binding oxidoreductase, at 440,268 to 441,272 Atu5447 Atu5448: Atu5448 - hypothetical protein, at 441,508 to 441,768 Atu5448 Atu5449: Atu5449 - heat-shock protein, at 442,069 to 442,545 Atu5449 Position (kb) 440 441 442Strain fitness (log2 ratio) -2 -1 0 1 2 3at 439.355 kb on + strandat 439.483 kb on - strand, within Atu5446at 439.494 kb on + strand, within Atu5446at 439.498 kb on + strand, within Atu5446at 439.507 kb on + strand, within Atu5446at 439.523 kb on + strand, within Atu5446at 439.533 kb on + strand, within Atu5446at 439.536 kb on - strand, within Atu5446at 439.590 kb on + strand, within Atu5446at 439.594 kb on - strand, within Atu5446at 439.596 kb on - strand, within Atu5446at 439.735 kb on - strand, within Atu5446at 439.749 kb on + strand, within Atu5446at 439.781 kb on + strand, within Atu5446at 439.805 kb on + strand, within Atu5446at 439.806 kb on + strand, within Atu5446at 439.806 kb on + strand, within Atu5446at 439.814 kb on - strand, within Atu5446at 439.816 kb on + strand, within Atu5446at 439.816 kb on + strand, within Atu5446at 439.816 kb on + strand, within Atu5446at 439.927 kb on - strand, within Atu5446at 439.927 kb on - strand, within Atu5446at 439.946 kb on - strand, within Atu5446at 439.989 kb on - strand, within Atu5446at 440.033 kb on + strand, within Atu5446at 440.033 kb on + strand, within Atu5446at 440.041 kb on - strand, within Atu5446at 440.283 kb on + strandat 440.297 kb on + strandat 440.388 kb on + strand, within Atu5447at 440.458 kb on + strand, within Atu5447at 440.507 kb on + strand, within Atu5447at 440.507 kb on + strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.515 kb on - strand, within Atu5447at 440.587 kb on + strand, within Atu5447at 440.616 kb on - strand, within Atu5447at 440.628 kb on - strand, within Atu5447at 440.628 kb on - strand, within Atu5447at 440.632 kb on - strand, within Atu5447at 440.635 kb on + strand, within Atu5447at 440.695 kb on + strand, within Atu5447at 440.791 kb on - strand, within Atu5447at 440.816 kb on + strand, within Atu5447at 440.824 kb on - strand, within Atu5447at 440.873 kb on + strand, within Atu5447at 440.898 kb on - strand, within Atu5447at 440.898 kb on - strand, within Atu5447at 440.949 kb on - strand, within Atu5447at 440.985 kb on + strand, within Atu5447at 440.988 kb on - strand, within Atu5447at 440.991 kb on + strand, within Atu5447at 441.086 kb on + strand, within Atu5447at 441.099 kb on - strand, within Atu5447at 441.109 kb on - strand, within Atu5447at 441.223 kb on - strandat 441.242 kb on + strandat 441.242 kb on + strandat 441.248 kb on + strandat 441.250 kb on - strandat 441.250 kb on - strandat 441.250 kb on - strandat 441.254 kb on + strandat 441.371 kb on - strandat 441.443 kb on + strandat 441.443 kb on + strandat 441.517 kb on - strandat 441.529 kb on - strandat 441.598 kb on - strand, within Atu5448at 441.598 kb on - strand, within Atu5448at 441.598 kb on - strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.600 kb on + strand, within Atu5448at 441.608 kb on - strand, within Atu5448at 441.622 kb on - strand, within Atu5448at 441.749 kb on - strandat 441.841 kb on + strandat 441.847 kb on - strandat 441.847 kb on - strandat 441.868 kb on + strandat 441.876 kb on - strandat 441.944 kb on + strandat 441.952 kb on - strandat 441.994 kb on + strandat 441.994 kb on + strandat 442.002 kb on - strandat 442.034 kb on - strandat 442.046 kb on - strandat 442.059 kb on + strandat 442.059 kb on + strandat 442.059 kb on + strandat 442.073 kb on - strandat 442.078 kb on + strandat 442.080 kb on - strandat 442.093 kb on + strandat 442.191 kb on + strand, within Atu5449at 442.265 kb on - strand, within Atu5449

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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439,355 + +0.3
439,483 - Atu5446 0.17 +1.0
439,494 + Atu5446 0.18 +0.3
439,498 + Atu5446 0.18 +0.5
439,507 + Atu5446 0.19 +0.4
439,523 + Atu5446 0.21 +1.5
439,533 + Atu5446 0.22 -1.4
439,536 - Atu5446 0.22 +0.4
439,590 + Atu5446 0.28 +0.9
439,594 - Atu5446 0.29 +0.2
439,596 - Atu5446 0.29 -0.0
439,735 - Atu5446 0.44 +0.2
439,749 + Atu5446 0.46 -0.5
439,781 + Atu5446 0.50 -0.5
439,805 + Atu5446 0.52 +1.2
439,806 + Atu5446 0.52 -0.5
439,806 + Atu5446 0.52 +2.3
439,814 - Atu5446 0.53 +1.9
439,816 + Atu5446 0.53 +0.1
439,816 + Atu5446 0.53 +0.2
439,816 + Atu5446 0.53 +0.2
439,927 - Atu5446 0.66 +0.7
439,927 - Atu5446 0.66 -0.9
439,946 - Atu5446 0.68 +0.2
439,989 - Atu5446 0.73 +1.0
440,033 + Atu5446 0.77 +0.3
440,033 + Atu5446 0.77 -0.2
440,041 - Atu5446 0.78 -1.0
440,283 + -0.3
440,297 + -0.3
440,388 + Atu5447 0.12 +0.4
440,458 + Atu5447 0.19 +0.2
440,507 + Atu5447 0.24 -0.6
440,507 + Atu5447 0.24 -0.6
440,515 - Atu5447 0.25 -0.5
440,515 - Atu5447 0.25 +2.4
440,515 - Atu5447 0.25 +0.7
440,587 + Atu5447 0.32 +0.7
440,616 - Atu5447 0.35 -0.2
440,628 - Atu5447 0.36 +0.7
440,628 - Atu5447 0.36 +1.3
440,632 - Atu5447 0.36 +0.8
440,635 + Atu5447 0.37 -1.4
440,695 + Atu5447 0.42 +0.7
440,791 - Atu5447 0.52 +1.3
440,816 + Atu5447 0.55 -0.4
440,824 - Atu5447 0.55 -0.7
440,873 + Atu5447 0.60 -1.4
440,898 - Atu5447 0.63 +1.2
440,898 - Atu5447 0.63 +3.1
440,949 - Atu5447 0.68 -0.3
440,985 + Atu5447 0.71 -0.3
440,988 - Atu5447 0.72 -1.9
440,991 + Atu5447 0.72 -0.9
441,086 + Atu5447 0.81 +1.2
441,099 - Atu5447 0.83 -0.9
441,109 - Atu5447 0.84 -0.0
441,223 - +1.2
441,242 + +0.0
441,242 + +0.6
441,248 + -0.2
441,250 - -0.6
441,250 - +0.8
441,250 - +0.3
441,254 + -0.4
441,371 - +0.6
441,443 + -0.9
441,443 + -0.3
441,517 - +1.9
441,529 - +0.2
441,598 - Atu5448 0.34 -0.6
441,598 - Atu5448 0.34 +0.6
441,598 - Atu5448 0.34 +0.1
441,600 + Atu5448 0.35 -1.9
441,600 + Atu5448 0.35 -1.5
441,600 + Atu5448 0.35 +0.5
441,600 + Atu5448 0.35 +1.9
441,608 - Atu5448 0.38 -0.1
441,622 - Atu5448 0.44 +0.7
441,749 - -0.7
441,841 + -0.7
441,847 - +1.7
441,847 - +0.2
441,868 + +0.6
441,876 - +0.2
441,944 + +0.9
441,952 - +0.4
441,994 + -1.6
441,994 + +0.8
442,002 - +0.1
442,034 - +0.8
442,046 - +1.2
442,059 + +1.9
442,059 + -0.8
442,059 + +0.1
442,073 - +1.0
442,078 + -0.9
442,080 - -0.6
442,093 + +0.7
442,191 + Atu5449 0.26 +1.9
442,265 - Atu5449 0.41 +1.5

Or see this region's nucleotide sequence