Strain Fitness in Agrobacterium fabrum C58 around Atu3323

Experiment: Urea (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3322 and Atu3323 are separated by 8 nucleotidesAtu3323 and Atu3324 are separated by 83 nucleotidesAtu3324 and Atu3325 overlap by 4 nucleotides Atu3322: Atu3322 - ABC transporter permease, at 354,773 to 356,428 Atu3322 Atu3323: Atu3323 - HlyD family secretion protein, at 356,437 to 357,795 Atu3323 Atu3324: Atu3324 - hypothetical protein, at 357,879 to 358,373 Atu3324 Atu3325: Atu3325 - exopolysaccharide production protein, at 358,370 to 359,638 Atu3325 Position (kb) 356 357 358Strain fitness (log2 ratio) -2 -1 0 1at 355.614 kb on + strand, within Atu3322at 355.826 kb on - strand, within Atu3322at 355.850 kb on + strand, within Atu3322at 355.899 kb on + strand, within Atu3322at 355.940 kb on + strand, within Atu3322at 355.969 kb on + strand, within Atu3322at 356.082 kb on - strand, within Atu3322at 356.118 kb on - strand, within Atu3322at 356.129 kb on - strand, within Atu3322at 356.163 kb on - strand, within Atu3322at 356.194 kb on + strand, within Atu3322at 356.196 kb on - strand, within Atu3322at 356.227 kb on + strand, within Atu3322at 356.227 kb on + strand, within Atu3322at 356.358 kb on + strandat 356.423 kb on + strandat 356.424 kb on - strandat 356.448 kb on + strandat 356.486 kb on - strandat 356.498 kb on + strandat 356.501 kb on - strandat 356.501 kb on - strandat 356.513 kb on + strandat 356.545 kb on - strandat 356.545 kb on - strandat 356.580 kb on + strand, within Atu3323at 356.614 kb on + strand, within Atu3323at 356.651 kb on - strand, within Atu3323at 356.822 kb on + strand, within Atu3323at 356.833 kb on + strand, within Atu3323at 356.976 kb on + strand, within Atu3323at 357.106 kb on + strand, within Atu3323at 357.155 kb on - strand, within Atu3323at 357.322 kb on + strand, within Atu3323at 357.374 kb on + strand, within Atu3323at 357.380 kb on + strand, within Atu3323at 357.498 kb on + strand, within Atu3323at 357.613 kb on - strand, within Atu3323at 357.620 kb on - strand, within Atu3323at 357.621 kb on + strand, within Atu3323at 357.631 kb on - strand, within Atu3323at 357.719 kb on - strandat 357.808 kb on + strandat 357.816 kb on - strandat 357.850 kb on + strandat 357.897 kb on - strandat 357.932 kb on + strand, within Atu3324at 358.075 kb on - strand, within Atu3324at 358.096 kb on - strand, within Atu3324at 358.200 kb on + strand, within Atu3324at 358.220 kb on + strand, within Atu3324at 358.263 kb on - strand, within Atu3324at 358.321 kb on - strand, within Atu3324at 358.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Urea (N)
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355,614 + Atu3322 0.51 -0.4
355,826 - Atu3322 0.64 +0.7
355,850 + Atu3322 0.65 +0.3
355,899 + Atu3322 0.68 +0.6
355,940 + Atu3322 0.70 +0.3
355,969 + Atu3322 0.72 +0.4
356,082 - Atu3322 0.79 -0.2
356,118 - Atu3322 0.81 -0.9
356,129 - Atu3322 0.82 -0.3
356,163 - Atu3322 0.84 +0.2
356,194 + Atu3322 0.86 +0.5
356,196 - Atu3322 0.86 +0.7
356,227 + Atu3322 0.88 +0.0
356,227 + Atu3322 0.88 +0.0
356,358 + -0.7
356,423 + +0.3
356,424 - -0.5
356,448 + +0.4
356,486 - +0.5
356,498 + +0.2
356,501 - +0.4
356,501 - -0.4
356,513 + +0.9
356,545 - +1.7
356,545 - +0.3
356,580 + Atu3323 0.11 -0.3
356,614 + Atu3323 0.13 +1.0
356,651 - Atu3323 0.16 +0.6
356,822 + Atu3323 0.28 -0.5
356,833 + Atu3323 0.29 +0.2
356,976 + Atu3323 0.40 -0.3
357,106 + Atu3323 0.49 +0.1
357,155 - Atu3323 0.53 +0.1
357,322 + Atu3323 0.65 +0.5
357,374 + Atu3323 0.69 +1.5
357,380 + Atu3323 0.69 +0.8
357,498 + Atu3323 0.78 +0.3
357,613 - Atu3323 0.87 -1.8
357,620 - Atu3323 0.87 +0.4
357,621 + Atu3323 0.87 +0.8
357,631 - Atu3323 0.88 +0.0
357,719 - -0.1
357,808 + +1.0
357,816 - +0.2
357,850 + -0.5
357,897 - +0.1
357,932 + Atu3324 0.11 +0.2
358,075 - Atu3324 0.40 -0.9
358,096 - Atu3324 0.44 +0.3
358,200 + Atu3324 0.65 +1.0
358,220 + Atu3324 0.69 +1.4
358,263 - Atu3324 0.78 +0.3
358,321 - Atu3324 0.89 -0.6
358,421 - -0.4

Or see this region's nucleotide sequence