Strain Fitness in Pseudomonas simiae WCS417 around PS417_02510

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02505 and PS417_02510 are separated by 294 nucleotidesPS417_02510 and PS417_02515 are separated by 54 nucleotides PS417_02505: PS417_02505 - membane protease HflC, at 572,328 to 573,194 _02505 PS417_02510: PS417_02510 - ATP phosphoribosyltransferase regulatory subunit, at 573,489 to 574,676 _02510 PS417_02515: PS417_02515 - adenylosuccinate synthetase, at 574,731 to 576,020 _02515 Position (kb) 573 574 575Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 573.192 kb on + strandat 573.192 kb on + strandat 573.211 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.410 kb on + strandat 573.487 kb on + strandat 573.535 kb on + strandat 573.993 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510at 574.278 kb on + strand, within PS417_02510at 574.657 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
573,192 + -2.1
573,192 + -2.0
573,211 + -0.7
573,274 + -1.7
573,274 + -1.3
573,274 + -0.0
573,274 + -1.4
573,410 + -0.1
573,487 + -3.7
573,535 + -5.5
573,993 + PS417_02510 0.42 -6.4
574,057 + PS417_02510 0.48 -2.6
574,057 + PS417_02510 0.48 -4.2
574,278 + PS417_02510 0.66 -2.4
574,657 + -1.0

Or see this region's nucleotide sequence