Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0477

Experiment: D-Salicin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0475 and Echvi_0476 are separated by 182 nucleotidesEchvi_0476 and Echvi_0477 overlap by 29 nucleotidesEchvi_0477 and Echvi_0478 are separated by 101 nucleotides Echvi_0475: Echvi_0475 - Uncharacterized protein conserved in bacteria, at 522,211 to 522,492 _0475 Echvi_0476: Echvi_0476 - Calcineurin-like phosphoesterase., at 522,675 to 523,334 _0476 Echvi_0477: Echvi_0477 - Exopolyphosphatase, at 523,306 to 524,853 _0477 Echvi_0478: Echvi_0478 - 6-phosphogluconate dehydrogenase, decarboxylating, at 524,955 to 526,865 _0478 Position (kb) 523 524 525Strain fitness (log2 ratio) -2 -1 0 1 2 3at 522.362 kb on + strand, within Echvi_0475at 522.366 kb on + strand, within Echvi_0475at 522.407 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.421 kb on + strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.422 kb on - strand, within Echvi_0475at 522.438 kb on + strand, within Echvi_0475at 522.506 kb on - strandat 522.517 kb on + strandat 522.517 kb on + strandat 522.522 kb on - strandat 522.576 kb on - strandat 522.595 kb on - strandat 522.613 kb on + strandat 522.626 kb on + strandat 522.641 kb on - strandat 522.712 kb on - strandat 522.799 kb on - strand, within Echvi_0476at 522.812 kb on - strand, within Echvi_0476at 522.923 kb on + strand, within Echvi_0476at 522.924 kb on - strand, within Echvi_0476at 522.948 kb on + strand, within Echvi_0476at 522.949 kb on - strand, within Echvi_0476at 523.222 kb on + strand, within Echvi_0476at 523.222 kb on + strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.223 kb on - strand, within Echvi_0476at 523.307 kb on + strandat 523.421 kb on + strandat 523.502 kb on - strand, within Echvi_0477at 523.662 kb on + strand, within Echvi_0477at 523.662 kb on + strand, within Echvi_0477at 523.679 kb on + strand, within Echvi_0477at 523.714 kb on - strand, within Echvi_0477at 523.767 kb on - strand, within Echvi_0477at 523.767 kb on - strand, within Echvi_0477at 523.809 kb on + strand, within Echvi_0477at 523.854 kb on + strand, within Echvi_0477at 523.855 kb on - strand, within Echvi_0477at 523.855 kb on - strand, within Echvi_0477at 523.884 kb on + strand, within Echvi_0477at 523.892 kb on - strand, within Echvi_0477at 523.932 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.981 kb on + strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 523.982 kb on - strand, within Echvi_0477at 524.059 kb on - strand, within Echvi_0477at 524.123 kb on - strand, within Echvi_0477at 524.162 kb on - strand, within Echvi_0477at 524.317 kb on - strand, within Echvi_0477at 524.333 kb on - strand, within Echvi_0477at 524.571 kb on + strand, within Echvi_0477at 524.656 kb on + strand, within Echvi_0477at 524.662 kb on + strand, within Echvi_0477at 524.662 kb on + strand, within Echvi_0477at 524.662 kb on + strand, within Echvi_0477at 524.667 kb on - strand, within Echvi_0477at 524.683 kb on + strand, within Echvi_0477at 524.683 kb on + strand, within Echvi_0477at 524.696 kb on + strand, within Echvi_0477at 524.696 kb on + strand, within Echvi_0477at 524.697 kb on - strand, within Echvi_0477at 524.697 kb on - strand, within Echvi_0477at 524.766 kb on + strandat 524.766 kb on + strandat 524.766 kb on + strandat 524.770 kb on + strandat 524.770 kb on + strandat 524.770 kb on + strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.771 kb on - strandat 524.833 kb on - strandat 524.837 kb on - strandat 524.837 kb on - strandat 524.837 kb on - strandat 524.880 kb on - strandat 524.899 kb on - strandat 524.903 kb on - strandat 524.918 kb on + strandat 524.918 kb on + strandat 524.922 kb on + strandat 524.922 kb on + strandat 524.922 kb on + strandat 525.060 kb on + strandat 525.060 kb on + strandat 525.162 kb on + strand, within Echvi_0478at 525.162 kb on + strand, within Echvi_0478at 525.243 kb on + strand, within Echvi_0478at 525.244 kb on - strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.400 kb on + strand, within Echvi_0478at 525.498 kb on - strand, within Echvi_0478at 525.563 kb on + strand, within Echvi_0478at 525.676 kb on + strand, within Echvi_0478at 525.677 kb on - strand, within Echvi_0478at 525.783 kb on + strand, within Echvi_0478at 525.783 kb on + strand, within Echvi_0478at 525.784 kb on - strand, within Echvi_0478at 525.784 kb on - strand, within Echvi_0478at 525.784 kb on - strand, within Echvi_0478at 525.793 kb on + strand, within Echvi_0478at 525.793 kb on + strand, within Echvi_0478at 525.794 kb on - strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478at 525.850 kb on + strand, within Echvi_0478

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
remove
522,362 + Echvi_0475 0.54 +0.1
522,366 + Echvi_0475 0.55 +2.1
522,407 + Echvi_0475 0.70 -1.6
522,421 + Echvi_0475 0.74 +0.7
522,421 + Echvi_0475 0.74 +0.7
522,422 - Echvi_0475 0.75 -0.1
522,422 - Echvi_0475 0.75 +0.3
522,438 + Echvi_0475 0.80 -0.4
522,506 - -1.0
522,517 + +0.8
522,517 + -0.6
522,522 - +1.2
522,576 - +0.9
522,595 - +1.1
522,613 + +1.4
522,626 + +0.5
522,641 - +0.3
522,712 - -1.0
522,799 - Echvi_0476 0.19 +1.0
522,812 - Echvi_0476 0.21 -2.0
522,923 + Echvi_0476 0.38 +0.7
522,924 - Echvi_0476 0.38 +0.4
522,948 + Echvi_0476 0.41 -1.8
522,949 - Echvi_0476 0.42 -1.0
523,222 + Echvi_0476 0.83 +0.8
523,222 + Echvi_0476 0.83 +0.1
523,223 - Echvi_0476 0.83 -1.6
523,223 - Echvi_0476 0.83 -0.0
523,223 - Echvi_0476 0.83 -0.8
523,223 - Echvi_0476 0.83 -2.0
523,307 + +1.1
523,421 + -2.4
523,502 - Echvi_0477 0.13 -0.2
523,662 + Echvi_0477 0.23 -1.2
523,662 + Echvi_0477 0.23 +0.7
523,679 + Echvi_0477 0.24 -1.4
523,714 - Echvi_0477 0.26 +1.1
523,767 - Echvi_0477 0.30 -0.9
523,767 - Echvi_0477 0.30 -0.1
523,809 + Echvi_0477 0.32 -1.6
523,854 + Echvi_0477 0.35 +0.4
523,855 - Echvi_0477 0.35 -1.2
523,855 - Echvi_0477 0.35 +0.8
523,884 + Echvi_0477 0.37 -1.8
523,892 - Echvi_0477 0.38 -1.2
523,932 + Echvi_0477 0.40 -0.3
523,981 + Echvi_0477 0.44 -0.5
523,981 + Echvi_0477 0.44 -1.9
523,981 + Echvi_0477 0.44 -1.1
523,981 + Echvi_0477 0.44 -0.1
523,981 + Echvi_0477 0.44 +1.3
523,981 + Echvi_0477 0.44 +0.8
523,982 - Echvi_0477 0.44 +0.4
523,982 - Echvi_0477 0.44 +1.1
523,982 - Echvi_0477 0.44 +0.2
524,059 - Echvi_0477 0.49 -0.9
524,123 - Echvi_0477 0.53 +0.6
524,162 - Echvi_0477 0.55 -0.4
524,317 - Echvi_0477 0.65 -0.4
524,333 - Echvi_0477 0.66 -0.9
524,571 + Echvi_0477 0.82 -1.0
524,656 + Echvi_0477 0.87 +0.5
524,662 + Echvi_0477 0.88 -1.2
524,662 + Echvi_0477 0.88 -0.2
524,662 + Echvi_0477 0.88 -0.6
524,667 - Echvi_0477 0.88 -1.3
524,683 + Echvi_0477 0.89 -1.2
524,683 + Echvi_0477 0.89 -0.8
524,696 + Echvi_0477 0.90 -0.1
524,696 + Echvi_0477 0.90 -0.2
524,697 - Echvi_0477 0.90 +0.4
524,697 - Echvi_0477 0.90 -0.5
524,766 + +0.2
524,766 + -1.5
524,766 + +0.3
524,770 + +1.7
524,770 + +1.6
524,770 + +0.6
524,771 - -1.8
524,771 - +1.0
524,771 - +0.7
524,771 - +2.6
524,771 - -1.7
524,833 - -1.1
524,837 - +1.7
524,837 - -2.4
524,837 - +0.9
524,880 - -1.1
524,899 - -0.6
524,903 - +0.4
524,918 + -0.4
524,918 + -0.3
524,922 + +1.4
524,922 + +0.6
524,922 + +0.6
525,060 + -0.1
525,060 + +0.6
525,162 + Echvi_0478 0.11 -0.8
525,162 + Echvi_0478 0.11 -0.6
525,243 + Echvi_0478 0.15 +0.5
525,244 - Echvi_0478 0.15 +0.4
525,400 + Echvi_0478 0.23 -1.4
525,400 + Echvi_0478 0.23 +1.8
525,400 + Echvi_0478 0.23 +1.0
525,400 + Echvi_0478 0.23 -0.2
525,498 - Echvi_0478 0.28 +1.5
525,563 + Echvi_0478 0.32 +3.0
525,676 + Echvi_0478 0.38 -0.9
525,677 - Echvi_0478 0.38 -0.3
525,783 + Echvi_0478 0.43 +0.5
525,783 + Echvi_0478 0.43 +1.5
525,784 - Echvi_0478 0.43 -0.1
525,784 - Echvi_0478 0.43 -1.1
525,784 - Echvi_0478 0.43 +0.1
525,793 + Echvi_0478 0.44 -0.2
525,793 + Echvi_0478 0.44 -0.4
525,794 - Echvi_0478 0.44 -0.6
525,850 + Echvi_0478 0.47 +1.3
525,850 + Echvi_0478 0.47 -0.0
525,850 + Echvi_0478 0.47 +0.7
525,850 + Echvi_0478 0.47 +1.6

Or see this region's nucleotide sequence