Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0322 and Echvi_0323 are separated by 70 nucleotides Echvi_0323 and Echvi_0324 are separated by 218 nucleotides
Echvi_0322: Echvi_0322 - Glycerol-3-phosphate dehydrogenase, at 336,329 to 337,393
_0322
Echvi_0323: Echvi_0323 - Gluconolactonase, at 337,464 to 338,357
_0323
Echvi_0324: Echvi_0324 - Uncharacterized protein involved in methicillin resistance, at 338,576 to 339,670
_0324
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 336.580 kb on - strand, within Echvi_0322 at 336.912 kb on - strand, within Echvi_0322 at 337.154 kb on + strand, within Echvi_0322 at 337.327 kb on + strand at 337.346 kb on + strand at 337.346 kb on + strand at 337.349 kb on + strand at 337.350 kb on - strand at 337.626 kb on + strand, within Echvi_0323 at 337.626 kb on + strand, within Echvi_0323 at 337.626 kb on + strand, within Echvi_0323 at 337.656 kb on + strand, within Echvi_0323 at 337.657 kb on - strand, within Echvi_0323 at 337.657 kb on - strand, within Echvi_0323 at 337.692 kb on + strand, within Echvi_0323 at 337.693 kb on - strand, within Echvi_0323 at 337.725 kb on + strand, within Echvi_0323 at 337.889 kb on + strand, within Echvi_0323 at 337.902 kb on + strand, within Echvi_0323 at 337.903 kb on - strand, within Echvi_0323 at 337.956 kb on + strand, within Echvi_0323 at 337.957 kb on - strand, within Echvi_0323 at 338.080 kb on - strand, within Echvi_0323 at 338.126 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.179 kb on - strand, within Echvi_0323 at 338.323 kb on - strand at 338.323 kb on - strand at 338.336 kb on - strand at 338.355 kb on + strand at 338.356 kb on - strand at 338.378 kb on + strand at 338.395 kb on - strand at 338.414 kb on + strand at 338.414 kb on + strand at 338.415 kb on - strand at 338.415 kb on - strand at 338.415 kb on - strand at 338.417 kb on + strand at 338.420 kb on + strand at 338.420 kb on + strand at 338.420 kb on + strand at 338.434 kb on + strand at 338.435 kb on - strand at 338.435 kb on - strand at 338.445 kb on - strand at 338.478 kb on - strand at 338.491 kb on + strand at 338.497 kb on + strand at 338.497 kb on + strand at 338.611 kb on - strand at 338.745 kb on + strand, within Echvi_0324 at 338.746 kb on - strand, within Echvi_0324 at 338.799 kb on + strand, within Echvi_0324 at 338.799 kb on + strand, within Echvi_0324 at 338.848 kb on - strand, within Echvi_0324 at 338.982 kb on + strand, within Echvi_0324 at 339.016 kb on - strand, within Echvi_0324 at 339.016 kb on - strand, within Echvi_0324 at 339.094 kb on + strand, within Echvi_0324 at 339.095 kb on - strand, within Echvi_0324 at 339.095 kb on - strand, within Echvi_0324 at 339.096 kb on + strand, within Echvi_0324 at 339.096 kb on + strand, within Echvi_0324 at 339.097 kb on - strand, within Echvi_0324 at 339.097 kb on - strand, within Echvi_0324 at 339.097 kb on - strand, within Echvi_0324 at 339.108 kb on + strand, within Echvi_0324 at 339.109 kb on - strand, within Echvi_0324 at 339.109 kb on - strand at 339.120 kb on + strand, within Echvi_0324 at 339.224 kb on + strand, within Echvi_0324 at 339.282 kb on + strand, within Echvi_0324 at 339.353 kb on + strand, within Echvi_0324 at 339.353 kb on + strand, within Echvi_0324
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 336,580 - Echvi_0322 0.24 +1.0 336,912 - Echvi_0322 0.55 +0.2 337,154 + Echvi_0322 0.77 -1.4 337,327 + +0.6 337,346 + +2.2 337,346 + -0.0 337,349 + +0.9 337,350 - +2.6 337,626 + Echvi_0323 0.18 -3.0 337,626 + Echvi_0323 0.18 -0.6 337,626 + Echvi_0323 0.18 +1.5 337,656 + Echvi_0323 0.21 +0.4 337,657 - Echvi_0323 0.22 +0.8 337,657 - Echvi_0323 0.22 -0.1 337,692 + Echvi_0323 0.26 +0.7 337,693 - Echvi_0323 0.26 -0.3 337,725 + Echvi_0323 0.29 +0.6 337,889 + Echvi_0323 0.48 +0.8 337,902 + Echvi_0323 0.49 +0.1 337,903 - Echvi_0323 0.49 +0.6 337,956 + Echvi_0323 0.55 -0.2 337,957 - Echvi_0323 0.55 +0.7 338,080 - Echvi_0323 0.69 +1.6 338,126 - Echvi_0323 0.74 +1.1 338,179 - Echvi_0323 0.80 -0.4 338,179 - Echvi_0323 0.80 +0.8 338,179 - Echvi_0323 0.80 +0.0 338,179 - Echvi_0323 0.80 +1.4 338,323 - -0.1 338,323 - -0.3 338,336 - -0.4 338,355 + +1.2 338,356 - -0.5 338,378 + +0.4 338,395 - +2.4 338,414 + -0.0 338,414 + -1.0 338,415 - -1.0 338,415 - +0.0 338,415 - +0.2 338,417 + -0.3 338,420 + +0.1 338,420 + -0.8 338,420 + -0.4 338,434 + -0.3 338,435 - -1.4 338,435 - -0.5 338,445 - +0.6 338,478 - -1.8 338,491 + -0.2 338,497 + +0.1 338,497 + +1.5 338,611 - +1.2 338,745 + Echvi_0324 0.15 +0.5 338,746 - Echvi_0324 0.16 -1.7 338,799 + Echvi_0324 0.20 +0.6 338,799 + Echvi_0324 0.20 -0.2 338,848 - Echvi_0324 0.25 +0.6 338,982 + Echvi_0324 0.37 +1.4 339,016 - Echvi_0324 0.40 -0.1 339,016 - Echvi_0324 0.40 -2.7 339,094 + Echvi_0324 0.47 +0.7 339,095 - Echvi_0324 0.47 +0.2 339,095 - Echvi_0324 0.47 -3.4 339,096 + Echvi_0324 0.47 +1.2 339,096 + Echvi_0324 0.47 +0.8 339,097 - Echvi_0324 0.48 +0.5 339,097 - Echvi_0324 0.48 -0.8 339,097 - Echvi_0324 0.48 -2.8 339,108 + Echvi_0324 0.49 -1.4 339,109 - Echvi_0324 0.49 +0.6 339,109 - +4.8 339,120 + Echvi_0324 0.50 +0.6 339,224 + Echvi_0324 0.59 -0.8 339,282 + Echvi_0324 0.64 -1.5 339,353 + Echvi_0324 0.71 +2.2 339,353 + Echvi_0324 0.71 +0.8
Or see this region's nucleotide sequence