Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0202 and Echvi_0203 are separated by 124 nucleotides Echvi_0203 and Echvi_0204 are separated by 150 nucleotides
Echvi_0202: Echvi_0202 - histidine ammonia-lyase, at 219,540 to 221,066
_0202
Echvi_0203: Echvi_0203 - Transcriptional regulator, at 221,191 to 222,069
_0203
Echvi_0204: Echvi_0204 - N-acetyl-beta-hexosaminidase, at 222,220 to 224,154
_0204
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 220.284 kb on - strand, within Echvi_0202 at 220.288 kb on - strand, within Echvi_0202 at 220.320 kb on - strand, within Echvi_0202 at 220.320 kb on - strand, within Echvi_0202 at 220.338 kb on + strand, within Echvi_0202 at 220.416 kb on - strand, within Echvi_0202 at 220.439 kb on + strand, within Echvi_0202 at 220.439 kb on + strand, within Echvi_0202 at 220.549 kb on + strand, within Echvi_0202 at 220.581 kb on + strand, within Echvi_0202 at 220.726 kb on - strand, within Echvi_0202 at 220.749 kb on + strand, within Echvi_0202 at 220.800 kb on + strand, within Echvi_0202 at 220.800 kb on + strand, within Echvi_0202 at 220.805 kb on + strand, within Echvi_0202 at 220.806 kb on - strand, within Echvi_0202 at 220.807 kb on + strand, within Echvi_0202 at 220.855 kb on + strand, within Echvi_0202 at 220.882 kb on + strand, within Echvi_0202 at 220.883 kb on - strand, within Echvi_0202 at 220.883 kb on - strand, within Echvi_0202 at 220.883 kb on - strand, within Echvi_0202 at 220.901 kb on + strand, within Echvi_0202 at 220.902 kb on - strand, within Echvi_0202 at 220.902 kb on - strand, within Echvi_0202 at 220.903 kb on + strand, within Echvi_0202 at 220.903 kb on + strand, within Echvi_0202 at 220.904 kb on - strand, within Echvi_0202 at 220.941 kb on - strand at 220.990 kb on - strand at 221.013 kb on - strand at 221.033 kb on + strand at 221.035 kb on + strand at 221.036 kb on - strand at 221.066 kb on + strand at 221.094 kb on - strand at 221.118 kb on - strand at 221.118 kb on - strand at 221.268 kb on + strand at 221.268 kb on + strand at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.500 kb on - strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.558 kb on - strand, within Echvi_0203 at 221.558 kb on - strand, within Echvi_0203 at 221.588 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.694 kb on - strand, within Echvi_0203 at 221.793 kb on - strand, within Echvi_0203 at 221.797 kb on + strand, within Echvi_0203 at 221.915 kb on + strand, within Echvi_0203 at 222.370 kb on + strand at 222.370 kb on + strand at 222.370 kb on + strand at 222.372 kb on + strand at 222.373 kb on - strand at 222.373 kb on - strand at 222.378 kb on - strand at 222.414 kb on - strand, within Echvi_0204 at 222.414 kb on - strand, within Echvi_0204 at 222.467 kb on + strand, within Echvi_0204 at 222.533 kb on - strand, within Echvi_0204 at 222.533 kb on - strand, within Echvi_0204 at 222.558 kb on + strand, within Echvi_0204 at 222.588 kb on - strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.630 kb on - strand, within Echvi_0204 at 222.685 kb on + strand, within Echvi_0204 at 222.686 kb on - strand, within Echvi_0204 at 222.687 kb on + strand, within Echvi_0204 at 222.707 kb on + strand, within Echvi_0204 at 222.707 kb on + strand, within Echvi_0204 at 222.708 kb on - strand, within Echvi_0204 at 222.769 kb on - strand, within Echvi_0204 at 222.843 kb on + strand, within Echvi_0204 at 222.851 kb on + strand, within Echvi_0204 at 222.871 kb on - strand, within Echvi_0204 at 222.895 kb on + strand, within Echvi_0204 at 222.934 kb on + strand, within Echvi_0204 at 222.937 kb on + strand, within Echvi_0204 at 222.937 kb on + strand, within Echvi_0204 at 222.938 kb on - strand, within Echvi_0204
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 220,284 - Echvi_0202 0.49 +0.3 220,288 - Echvi_0202 0.49 +0.2 220,320 - Echvi_0202 0.51 -0.0 220,320 - Echvi_0202 0.51 +1.6 220,338 + Echvi_0202 0.52 +0.1 220,416 - Echvi_0202 0.57 -0.4 220,439 + Echvi_0202 0.59 -0.7 220,439 + Echvi_0202 0.59 +1.0 220,549 + Echvi_0202 0.66 +0.5 220,581 + Echvi_0202 0.68 +0.3 220,726 - Echvi_0202 0.78 +0.5 220,749 + Echvi_0202 0.79 -1.3 220,800 + Echvi_0202 0.83 -0.7 220,800 + Echvi_0202 0.83 +1.3 220,805 + Echvi_0202 0.83 +0.9 220,806 - Echvi_0202 0.83 -0.3 220,807 + Echvi_0202 0.83 -0.4 220,855 + Echvi_0202 0.86 -0.4 220,882 + Echvi_0202 0.88 +1.5 220,883 - Echvi_0202 0.88 +1.4 220,883 - Echvi_0202 0.88 -0.6 220,883 - Echvi_0202 0.88 -1.3 220,901 + Echvi_0202 0.89 -0.6 220,902 - Echvi_0202 0.89 +1.2 220,902 - Echvi_0202 0.89 -2.1 220,903 + Echvi_0202 0.89 +0.4 220,903 + Echvi_0202 0.89 +1.0 220,904 - Echvi_0202 0.89 +0.6 220,941 - +2.2 220,990 - -0.0 221,013 - -1.5 221,033 + -0.8 221,035 + -2.9 221,036 - +0.5 221,066 + -0.8 221,094 - -1.5 221,118 - +0.8 221,118 - +0.7 221,268 + +1.0 221,268 + +0.0 221,354 + Echvi_0203 0.19 +1.2 221,354 + Echvi_0203 0.19 -1.3 221,354 + Echvi_0203 0.19 -0.1 221,354 + Echvi_0203 0.19 +2.6 221,444 + Echvi_0203 0.29 +0.2 221,444 + Echvi_0203 0.29 +1.7 221,444 + Echvi_0203 0.29 -0.5 221,500 - Echvi_0203 0.35 +0.1 221,557 + Echvi_0203 0.42 +1.2 221,557 + Echvi_0203 0.42 +1.3 221,557 + Echvi_0203 0.42 +1.1 221,557 + Echvi_0203 0.42 -0.0 221,558 - Echvi_0203 0.42 +0.5 221,558 - Echvi_0203 0.42 +0.8 221,588 + Echvi_0203 0.45 +0.0 221,693 + Echvi_0203 0.57 -2.5 221,693 + Echvi_0203 0.57 +0.4 221,693 + Echvi_0203 0.57 -0.8 221,694 - Echvi_0203 0.57 -1.3 221,793 - Echvi_0203 0.68 +0.7 221,797 + Echvi_0203 0.69 -2.1 221,915 + Echvi_0203 0.82 -1.9 222,370 + -1.3 222,370 + -0.7 222,370 + -1.9 222,372 + -1.1 222,373 - -0.4 222,373 - -1.3 222,378 - +1.1 222,414 - Echvi_0204 0.10 -2.3 222,414 - Echvi_0204 0.10 +0.7 222,467 + Echvi_0204 0.13 +0.5 222,533 - Echvi_0204 0.16 -2.1 222,533 - Echvi_0204 0.16 +0.2 222,558 + Echvi_0204 0.17 +1.2 222,588 - Echvi_0204 0.19 +0.1 222,611 + Echvi_0204 0.20 -1.5 222,611 + Echvi_0204 0.20 -0.8 222,611 + Echvi_0204 0.20 +0.3 222,630 - Echvi_0204 0.21 +1.2 222,685 + Echvi_0204 0.24 +1.3 222,686 - Echvi_0204 0.24 -0.1 222,687 + Echvi_0204 0.24 -1.0 222,707 + Echvi_0204 0.25 -0.6 222,707 + Echvi_0204 0.25 -1.6 222,708 - Echvi_0204 0.25 -1.4 222,769 - Echvi_0204 0.28 -0.3 222,843 + Echvi_0204 0.32 -1.3 222,851 + Echvi_0204 0.33 +0.6 222,871 - Echvi_0204 0.34 -0.9 222,895 + Echvi_0204 0.35 -0.7 222,934 + Echvi_0204 0.37 +1.9 222,937 + Echvi_0204 0.37 +0.9 222,937 + Echvi_0204 0.37 +0.1 222,938 - Echvi_0204 0.37 -1.1
Or see this region's nucleotide sequence