Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20885 and CA264_20890 are separated by 52 nucleotides CA264_20890 and CA264_20895 are separated by 906 nucleotides
CA264_20885: CA264_20885 - T9SS C-terminal target domain-containing protein, at 40,300 to 43,356
_20885
CA264_20890: CA264_20890 - hypothetical protein, at 43,409 to 43,957
_20890
CA264_20895: CA264_20895 - hypothetical protein, at 44,864 to 45,274
_20895
Position (kb) 43
44 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 42.449 kb on + strand, within CA264_20885 at 42.449 kb on + strand, within CA264_20885 at 42.450 kb on - strand, within CA264_20885 at 42.450 kb on - strand, within CA264_20885 at 42.455 kb on + strand, within CA264_20885 at 42.455 kb on + strand, within CA264_20885 at 42.458 kb on + strand, within CA264_20885 at 42.458 kb on + strand, within CA264_20885 at 42.458 kb on + strand, within CA264_20885 at 42.459 kb on - strand, within CA264_20885 at 42.459 kb on - strand, within CA264_20885 at 42.460 kb on + strand, within CA264_20885 at 42.461 kb on - strand, within CA264_20885 at 42.461 kb on - strand, within CA264_20885 at 42.461 kb on - strand, within CA264_20885 at 42.461 kb on - strand, within CA264_20885 at 42.461 kb on - strand, within CA264_20885 at 42.461 kb on - strand, within CA264_20885 at 42.498 kb on - strand, within CA264_20885 at 42.525 kb on + strand, within CA264_20885 at 42.526 kb on - strand, within CA264_20885 at 42.526 kb on - strand, within CA264_20885 at 42.526 kb on - strand, within CA264_20885 at 42.527 kb on + strand, within CA264_20885 at 42.527 kb on + strand, within CA264_20885 at 42.527 kb on + strand, within CA264_20885 at 42.527 kb on + strand, within CA264_20885 at 42.528 kb on - strand, within CA264_20885 at 42.528 kb on - strand, within CA264_20885 at 42.546 kb on + strand, within CA264_20885 at 42.546 kb on + strand, within CA264_20885 at 42.547 kb on - strand, within CA264_20885 at 42.548 kb on + strand, within CA264_20885 at 42.607 kb on - strand, within CA264_20885 at 42.607 kb on - strand, within CA264_20885 at 42.627 kb on + strand, within CA264_20885 at 42.627 kb on + strand, within CA264_20885 at 42.628 kb on - strand, within CA264_20885 at 42.638 kb on + strand, within CA264_20885 at 42.639 kb on - strand, within CA264_20885 at 42.705 kb on + strand, within CA264_20885 at 42.706 kb on - strand, within CA264_20885 at 42.708 kb on - strand, within CA264_20885 at 42.713 kb on - strand, within CA264_20885 at 42.754 kb on - strand, within CA264_20885 at 42.772 kb on + strand, within CA264_20885 at 42.778 kb on + strand, within CA264_20885 at 42.778 kb on + strand, within CA264_20885 at 42.794 kb on - strand, within CA264_20885 at 42.794 kb on - strand, within CA264_20885 at 42.794 kb on - strand, within CA264_20885 at 42.794 kb on - strand, within CA264_20885 at 42.839 kb on - strand, within CA264_20885 at 42.895 kb on + strand, within CA264_20885 at 42.896 kb on - strand, within CA264_20885 at 42.896 kb on - strand, within CA264_20885 at 42.899 kb on + strand, within CA264_20885 at 42.930 kb on - strand, within CA264_20885 at 42.930 kb on - strand, within CA264_20885 at 42.934 kb on + strand, within CA264_20885 at 42.934 kb on + strand, within CA264_20885 at 42.935 kb on - strand, within CA264_20885 at 42.935 kb on - strand, within CA264_20885 at 42.999 kb on - strand, within CA264_20885 at 43.001 kb on + strand, within CA264_20885 at 43.001 kb on + strand, within CA264_20885 at 43.002 kb on - strand, within CA264_20885 at 43.021 kb on + strand, within CA264_20885 at 43.022 kb on - strand, within CA264_20885 at 43.026 kb on + strand, within CA264_20885 at 43.073 kb on - strand at 43.091 kb on + strand at 43.092 kb on - strand at 43.092 kb on - strand at 43.092 kb on - strand at 43.356 kb on + strand at 43.370 kb on + strand at 43.372 kb on + strand at 43.493 kb on + strand, within CA264_20890 at 43.494 kb on - strand, within CA264_20890 at 43.505 kb on - strand, within CA264_20890 at 43.546 kb on + strand, within CA264_20890 at 43.561 kb on - strand, within CA264_20890 at 43.578 kb on + strand, within CA264_20890 at 43.630 kb on + strand, within CA264_20890 at 43.631 kb on - strand, within CA264_20890 at 43.631 kb on - strand, within CA264_20890 at 43.641 kb on - strand, within CA264_20890 at 43.696 kb on + strand, within CA264_20890 at 43.715 kb on + strand, within CA264_20890 at 43.715 kb on + strand, within CA264_20890 at 43.716 kb on - strand, within CA264_20890 at 43.716 kb on - strand, within CA264_20890 at 43.726 kb on + strand, within CA264_20890 at 43.749 kb on + strand, within CA264_20890 at 43.749 kb on + strand, within CA264_20890 at 43.749 kb on + strand, within CA264_20890 at 43.834 kb on + strand, within CA264_20890 at 43.835 kb on - strand, within CA264_20890 at 43.948 kb on + strand at 43.949 kb on - strand at 43.957 kb on + strand at 43.967 kb on - strand at 44.117 kb on + strand at 44.131 kb on + strand at 44.183 kb on + strand at 44.183 kb on + strand at 44.184 kb on - strand at 44.184 kb on - strand at 44.186 kb on + strand at 44.186 kb on + strand at 44.187 kb on - strand at 44.204 kb on - strand at 44.248 kb on - strand at 44.329 kb on - strand at 44.349 kb on + strand at 44.349 kb on + strand at 44.357 kb on + strand at 44.358 kb on - strand at 44.360 kb on + strand at 44.361 kb on - strand at 44.361 kb on - strand at 44.365 kb on - strand at 44.413 kb on + strand at 44.457 kb on - strand at 44.494 kb on - strand at 44.590 kb on - strand at 44.653 kb on - strand at 44.653 kb on - strand at 44.691 kb on - strand at 44.692 kb on + strand at 44.693 kb on - strand at 44.706 kb on + strand at 44.707 kb on - strand at 44.708 kb on + strand at 44.709 kb on - strand at 44.716 kb on + strand at 44.818 kb on - strand at 44.826 kb on + strand at 44.835 kb on + strand at 44.841 kb on + strand at 44.850 kb on + strand at 44.850 kb on + strand at 44.850 kb on + strand at 44.851 kb on - strand at 44.875 kb on - strand at 44.907 kb on + strand, within CA264_20895 at 44.945 kb on + strand, within CA264_20895 at 44.945 kb on + strand, within CA264_20895 at 44.946 kb on - strand, within CA264_20895
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 42,449 + CA264_20885 0.70 -0.3 42,449 + CA264_20885 0.70 +0.4 42,450 - CA264_20885 0.70 -0.0 42,450 - CA264_20885 0.70 -0.6 42,455 + CA264_20885 0.70 -0.3 42,455 + CA264_20885 0.70 +0.2 42,458 + CA264_20885 0.71 +0.3 42,458 + CA264_20885 0.71 -0.3 42,458 + CA264_20885 0.71 +0.4 42,459 - CA264_20885 0.71 +0.2 42,459 - CA264_20885 0.71 -0.5 42,460 + CA264_20885 0.71 +0.3 42,461 - CA264_20885 0.71 -1.9 42,461 - CA264_20885 0.71 -0.5 42,461 - CA264_20885 0.71 -1.1 42,461 - CA264_20885 0.71 -0.3 42,461 - CA264_20885 0.71 -0.6 42,461 - CA264_20885 0.71 -0.2 42,498 - CA264_20885 0.72 -0.4 42,525 + CA264_20885 0.73 +0.2 42,526 - CA264_20885 0.73 +0.4 42,526 - CA264_20885 0.73 -0.8 42,526 - CA264_20885 0.73 -0.8 42,527 + CA264_20885 0.73 -0.0 42,527 + CA264_20885 0.73 +0.0 42,527 + CA264_20885 0.73 +0.2 42,527 + CA264_20885 0.73 -0.1 42,528 - CA264_20885 0.73 +0.7 42,528 - CA264_20885 0.73 -0.8 42,546 + CA264_20885 0.73 +2.1 42,546 + CA264_20885 0.73 +0.9 42,547 - CA264_20885 0.74 -0.3 42,548 + CA264_20885 0.74 -0.5 42,607 - CA264_20885 0.75 -0.1 42,607 - CA264_20885 0.75 -0.4 42,627 + CA264_20885 0.76 -2.0 42,627 + CA264_20885 0.76 +0.1 42,628 - CA264_20885 0.76 -0.4 42,638 + CA264_20885 0.76 +0.3 42,639 - CA264_20885 0.77 -0.5 42,705 + CA264_20885 0.79 +0.3 42,706 - CA264_20885 0.79 +0.3 42,708 - CA264_20885 0.79 -0.5 42,713 - CA264_20885 0.79 -0.4 42,754 - CA264_20885 0.80 +0.4 42,772 + CA264_20885 0.81 +0.2 42,778 + CA264_20885 0.81 +1.1 42,778 + CA264_20885 0.81 +1.5 42,794 - CA264_20885 0.82 -1.3 42,794 - CA264_20885 0.82 -0.6 42,794 - CA264_20885 0.82 -0.9 42,794 - CA264_20885 0.82 +0.4 42,839 - CA264_20885 0.83 +0.0 42,895 + CA264_20885 0.85 -0.0 42,896 - CA264_20885 0.85 -1.5 42,896 - CA264_20885 0.85 -1.1 42,899 + CA264_20885 0.85 +0.8 42,930 - CA264_20885 0.86 +0.1 42,930 - CA264_20885 0.86 -0.4 42,934 + CA264_20885 0.86 +0.3 42,934 + CA264_20885 0.86 -0.0 42,935 - CA264_20885 0.86 +0.0 42,935 - CA264_20885 0.86 -0.3 42,999 - CA264_20885 0.88 -0.2 43,001 + CA264_20885 0.88 +0.1 43,001 + CA264_20885 0.88 +0.3 43,002 - CA264_20885 0.88 +0.5 43,021 + CA264_20885 0.89 -0.1 43,022 - CA264_20885 0.89 -1.2 43,026 + CA264_20885 0.89 +0.4 43,073 - -0.2 43,091 + +0.1 43,092 - -0.9 43,092 - -0.4 43,092 - -0.0 43,356 + -0.6 43,370 + +0.3 43,372 + +0.3 43,493 + CA264_20890 0.15 -0.6 43,494 - CA264_20890 0.15 -1.1 43,505 - CA264_20890 0.17 -0.5 43,546 + CA264_20890 0.25 -3.0 43,561 - CA264_20890 0.28 -0.2 43,578 + CA264_20890 0.31 -0.1 43,630 + CA264_20890 0.40 -0.5 43,631 - CA264_20890 0.40 -0.3 43,631 - CA264_20890 0.40 -0.3 43,641 - CA264_20890 0.42 -0.2 43,696 + CA264_20890 0.52 -0.1 43,715 + CA264_20890 0.56 +0.0 43,715 + CA264_20890 0.56 -0.1 43,716 - CA264_20890 0.56 -1.5 43,716 - CA264_20890 0.56 -0.0 43,726 + CA264_20890 0.58 +0.9 43,749 + CA264_20890 0.62 -0.4 43,749 + CA264_20890 0.62 -0.0 43,749 + CA264_20890 0.62 +0.4 43,834 + CA264_20890 0.77 -3.2 43,835 - CA264_20890 0.78 -0.9 43,948 + +0.4 43,949 - +0.2 43,957 + -1.0 43,967 - -0.3 44,117 + -0.2 44,131 + -0.4 44,183 + -0.2 44,183 + -0.0 44,184 - -1.3 44,184 - -1.0 44,186 + -0.5 44,186 + -0.2 44,187 - -0.8 44,204 - -1.0 44,248 - -0.4 44,329 - -0.6 44,349 + +0.4 44,349 + +1.6 44,357 + +0.0 44,358 - -0.1 44,360 + +0.3 44,361 - -1.3 44,361 - -0.5 44,365 - -0.0 44,413 + +0.5 44,457 - -0.3 44,494 - -0.8 44,590 - -0.1 44,653 - -0.1 44,653 - -0.2 44,691 - -0.3 44,692 + +0.6 44,693 - -0.1 44,706 + +0.0 44,707 - -0.6 44,708 + +0.6 44,709 - -1.1 44,716 + -0.7 44,818 - +0.2 44,826 + +0.6 44,835 + -0.3 44,841 + -0.0 44,850 + -1.2 44,850 + +0.5 44,850 + +0.2 44,851 - -0.7 44,875 - -4.5 44,907 + CA264_20895 0.10 +0.2 44,945 + CA264_20895 0.20 -0.4 44,945 + CA264_20895 0.20 +0.1 44,946 - CA264_20895 0.20 +0.6
Or see this region's nucleotide sequence