Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19240

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19230 and CA264_19235 are separated by 141 nucleotidesCA264_19235 and CA264_19240 are separated by 52 nucleotidesCA264_19240 and CA264_19245 are separated by 80 nucleotidesCA264_19245 and CA264_19250 are separated by 85 nucleotides CA264_19230: CA264_19230 - nicotinate-nicotinamide nucleotide adenylyltransferase, at 4,465,896 to 4,466,468 _19230 CA264_19235: CA264_19235 - ribosome-recycling factor, at 4,466,610 to 4,467,173 _19235 CA264_19240: CA264_19240 - UMP kinase, at 4,467,226 to 4,468,002 _19240 CA264_19245: CA264_19245 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 4,468,083 to 4,468,583 _19245 CA264_19250: CA264_19250 - alanyl aminopeptidase, at 4,468,669 to 4,471,161 _19250 Position (kb) 4467 4468 4469Strain fitness (log2 ratio) -2 -1 0 1at 4466.493 kb on + strandat 4466.515 kb on + strandat 4466.516 kb on - strandat 4466.516 kb on - strandat 4466.521 kb on - strandat 4466.579 kb on + strandat 4466.579 kb on + strandat 4466.603 kb on + strandat 4466.611 kb on + strandat 4467.185 kb on + strandat 4467.186 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.081 kb on - strandat 4468.173 kb on - strand, within CA264_19245at 4468.173 kb on - strand, within CA264_19245at 4468.260 kb on + strand, within CA264_19245at 4468.260 kb on + strand, within CA264_19245at 4468.261 kb on - strand, within CA264_19245at 4468.261 kb on - strand, within CA264_19245at 4468.261 kb on - strand, within CA264_19245at 4468.261 kb on - strand, within CA264_19245at 4468.263 kb on - strand, within CA264_19245at 4468.362 kb on - strand, within CA264_19245at 4468.362 kb on - strand, within CA264_19245at 4468.371 kb on + strand, within CA264_19245at 4468.371 kb on + strand, within CA264_19245at 4468.412 kb on - strand, within CA264_19245at 4468.426 kb on - strand, within CA264_19245at 4468.466 kb on - strand, within CA264_19245at 4468.470 kb on - strand, within CA264_19245at 4468.523 kb on + strand, within CA264_19245at 4468.523 kb on + strand, within CA264_19245at 4468.607 kb on + strandat 4468.608 kb on - strandat 4468.608 kb on - strandat 4468.614 kb on - strandat 4468.629 kb on + strandat 4468.678 kb on - strandat 4468.691 kb on + strandat 4468.692 kb on - strandat 4468.695 kb on - strandat 4468.695 kb on - strandat 4468.695 kb on - strandat 4468.695 kb on - strandat 4468.752 kb on - strandat 4468.752 kb on - strandat 4468.915 kb on + strandat 4468.938 kb on + strand, within CA264_19250at 4468.952 kb on - strand, within CA264_19250

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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4,466,493 + -1.2
4,466,515 + -0.2
4,466,516 - -0.8
4,466,516 - -1.6
4,466,521 - -0.4
4,466,579 + -0.3
4,466,579 + -0.6
4,466,603 + -0.2
4,466,611 + -0.7
4,467,185 + -0.3
4,467,186 - +0.1
4,468,081 - -1.0
4,468,081 - -0.6
4,468,081 - -0.7
4,468,081 - -0.4
4,468,081 - +0.3
4,468,081 - -0.8
4,468,173 - CA264_19245 0.18 -0.5
4,468,173 - CA264_19245 0.18 -0.5
4,468,260 + CA264_19245 0.35 -0.4
4,468,260 + CA264_19245 0.35 -0.0
4,468,261 - CA264_19245 0.36 -0.2
4,468,261 - CA264_19245 0.36 +0.1
4,468,261 - CA264_19245 0.36 -0.4
4,468,261 - CA264_19245 0.36 -0.5
4,468,263 - CA264_19245 0.36 -1.9
4,468,362 - CA264_19245 0.56 -1.6
4,468,362 - CA264_19245 0.56 +0.6
4,468,371 + CA264_19245 0.57 -1.2
4,468,371 + CA264_19245 0.57 -0.9
4,468,412 - CA264_19245 0.66 -2.1
4,468,426 - CA264_19245 0.68 -0.8
4,468,466 - CA264_19245 0.76 -0.1
4,468,470 - CA264_19245 0.77 +0.1
4,468,523 + CA264_19245 0.88 -0.4
4,468,523 + CA264_19245 0.88 +0.4
4,468,607 + -0.4
4,468,608 - -0.1
4,468,608 - -0.1
4,468,614 - -1.5
4,468,629 + -0.7
4,468,678 - -0.5
4,468,691 + -0.1
4,468,692 - -0.7
4,468,695 - -0.7
4,468,695 - -0.7
4,468,695 - +0.1
4,468,695 - -1.3
4,468,752 - -1.0
4,468,752 - -0.5
4,468,915 + -0.0
4,468,938 + CA264_19250 0.11 +1.7
4,468,952 - CA264_19250 0.11 -0.1

Or see this region's nucleotide sequence