Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15750 and CA264_15755 are separated by 117 nucleotides CA264_15755 and CA264_15760 are separated by 428 nucleotides CA264_15760 and CA264_15765 are separated by 67 nucleotides CA264_15765 and CA264_15770 are separated by 170 nucleotides
CA264_15750: CA264_15750 - hypothetical protein, at 3,679,446 to 3,679,682
_15750
CA264_15755: CA264_15755 - hypothetical protein, at 3,679,800 to 3,680,165
_15755
CA264_15760: CA264_15760 - hypothetical protein, at 3,680,594 to 3,680,938
_15760
CA264_15765: CA264_15765 - T9SS C-terminal target domain-containing protein, at 3,681,006 to 3,681,386
_15765
CA264_15770: CA264_15770 - FAD-dependent oxidoreductase, at 3,681,557 to 3,682,672
_15770
Position (kb)
3680
3681 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3679.618 kb on + strand, within CA264_15750 at 3679.618 kb on + strand, within CA264_15750 at 3679.618 kb on + strand at 3679.619 kb on - strand, within CA264_15750 at 3679.619 kb on - strand, within CA264_15750 at 3679.619 kb on - strand, within CA264_15750 at 3679.623 kb on - strand, within CA264_15750 at 3679.641 kb on + strand, within CA264_15750 at 3679.699 kb on + strand at 3679.721 kb on - strand at 3679.739 kb on + strand at 3679.739 kb on + strand at 3679.775 kb on + strand at 3679.776 kb on - strand at 3679.779 kb on + strand at 3679.779 kb on + strand at 3679.779 kb on + strand at 3679.780 kb on - strand at 3679.791 kb on - strand at 3679.873 kb on + strand, within CA264_15755 at 3679.874 kb on - strand, within CA264_15755 at 3679.943 kb on + strand, within CA264_15755 at 3679.993 kb on - strand, within CA264_15755 at 3680.001 kb on + strand, within CA264_15755 at 3680.014 kb on + strand, within CA264_15755 at 3680.015 kb on - strand, within CA264_15755 at 3680.077 kb on + strand, within CA264_15755 at 3680.078 kb on - strand, within CA264_15755 at 3680.115 kb on + strand, within CA264_15755 at 3680.116 kb on - strand, within CA264_15755 at 3680.116 kb on - strand, within CA264_15755 at 3680.117 kb on + strand, within CA264_15755 at 3680.118 kb on - strand, within CA264_15755 at 3680.123 kb on - strand, within CA264_15755 at 3680.128 kb on + strand, within CA264_15755 at 3680.156 kb on - strand at 3680.177 kb on + strand at 3680.185 kb on + strand at 3680.186 kb on - strand at 3680.186 kb on - strand at 3680.254 kb on + strand at 3680.254 kb on + strand at 3680.255 kb on - strand at 3680.336 kb on + strand at 3680.338 kb on + strand at 3680.338 kb on + strand at 3680.339 kb on - strand at 3680.339 kb on - strand at 3680.367 kb on - strand at 3680.369 kb on - strand at 3680.382 kb on + strand at 3680.382 kb on + strand at 3680.420 kb on + strand at 3680.440 kb on + strand at 3680.473 kb on - strand at 3680.517 kb on + strand at 3680.537 kb on + strand at 3680.544 kb on - strand at 3680.561 kb on + strand at 3680.562 kb on - strand at 3680.562 kb on - strand at 3680.565 kb on + strand at 3680.565 kb on + strand at 3680.565 kb on + strand at 3680.566 kb on - strand at 3680.566 kb on - strand at 3680.566 kb on - strand at 3680.566 kb on - strand at 3680.566 kb on - strand at 3680.567 kb on + strand at 3680.568 kb on - strand at 3680.568 kb on - strand at 3680.568 kb on - strand at 3680.568 kb on - strand at 3680.570 kb on - strand at 3680.570 kb on - strand at 3680.575 kb on + strand at 3680.575 kb on + strand at 3680.575 kb on + strand at 3680.575 kb on + strand at 3680.575 kb on + strand at 3680.575 kb on + strand at 3680.575 kb on + strand at 3680.576 kb on - strand at 3680.576 kb on - strand at 3680.576 kb on - strand at 3680.587 kb on - strand at 3680.635 kb on - strand, within CA264_15760 at 3680.635 kb on - strand, within CA264_15760 at 3680.804 kb on + strand, within CA264_15760 at 3680.936 kb on + strand at 3680.936 kb on + strand at 3680.993 kb on + strand at 3681.037 kb on + strand at 3681.038 kb on - strand at 3681.042 kb on - strand at 3681.061 kb on + strand, within CA264_15765 at 3681.061 kb on + strand, within CA264_15765 at 3681.061 kb on + strand, within CA264_15765 at 3681.093 kb on - strand, within CA264_15765 at 3681.111 kb on - strand, within CA264_15765 at 3681.177 kb on + strand, within CA264_15765 at 3681.197 kb on + strand, within CA264_15765 at 3681.239 kb on - strand, within CA264_15765 at 3681.248 kb on + strand, within CA264_15765 at 3681.248 kb on + strand, within CA264_15765 at 3681.352 kb on - strand at 3681.352 kb on - strand at 3681.352 kb on - strand at 3681.359 kb on + strand at 3681.375 kb on - strand at 3681.387 kb on - strand at 3681.388 kb on + strand at 3681.409 kb on - strand at 3681.418 kb on - strand at 3681.543 kb on - strand at 3681.779 kb on - strand, within CA264_15770 at 3681.819 kb on + strand, within CA264_15770 at 3681.843 kb on - strand, within CA264_15770 at 3681.845 kb on - strand, within CA264_15770 at 3681.853 kb on + strand, within CA264_15770 at 3681.857 kb on + strand, within CA264_15770 at 3681.858 kb on - strand, within CA264_15770 at 3681.863 kb on + strand, within CA264_15770 at 3681.863 kb on + strand, within CA264_15770 at 3681.864 kb on - strand, within CA264_15770
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 3,679,618 + CA264_15750 0.73 -0.3 3,679,618 + CA264_15750 0.73 -0.4 3,679,618 + +0.9 3,679,619 - CA264_15750 0.73 -0.2 3,679,619 - CA264_15750 0.73 +0.5 3,679,619 - CA264_15750 0.73 -0.2 3,679,623 - CA264_15750 0.75 -0.3 3,679,641 + CA264_15750 0.82 -0.9 3,679,699 + -0.7 3,679,721 - -1.5 3,679,739 + -0.2 3,679,739 + +0.7 3,679,775 + -1.3 3,679,776 - -0.7 3,679,779 + -1.8 3,679,779 + -0.8 3,679,779 + +0.5 3,679,780 - -1.6 3,679,791 - -1.7 3,679,873 + CA264_15755 0.20 -1.3 3,679,874 - CA264_15755 0.20 -0.4 3,679,943 + CA264_15755 0.39 -1.0 3,679,993 - CA264_15755 0.53 -1.4 3,680,001 + CA264_15755 0.55 -0.8 3,680,014 + CA264_15755 0.58 -1.1 3,680,015 - CA264_15755 0.59 -0.5 3,680,077 + CA264_15755 0.76 +0.1 3,680,078 - CA264_15755 0.76 -0.5 3,680,115 + CA264_15755 0.86 -0.8 3,680,116 - CA264_15755 0.86 -0.7 3,680,116 - CA264_15755 0.86 -0.2 3,680,117 + CA264_15755 0.87 -1.3 3,680,118 - CA264_15755 0.87 +0.1 3,680,123 - CA264_15755 0.88 -0.4 3,680,128 + CA264_15755 0.90 -0.8 3,680,156 - -0.8 3,680,177 + -0.5 3,680,185 + -0.7 3,680,186 - -0.7 3,680,186 - -0.7 3,680,254 + -0.1 3,680,254 + +0.0 3,680,255 - -0.5 3,680,336 + -1.3 3,680,338 + -0.3 3,680,338 + -0.0 3,680,339 - -1.0 3,680,339 - -1.1 3,680,367 - -0.5 3,680,369 - +0.3 3,680,382 + -0.4 3,680,382 + -0.0 3,680,420 + -0.3 3,680,440 + -0.4 3,680,473 - -1.3 3,680,517 + -0.4 3,680,537 + -0.5 3,680,544 - -0.7 3,680,561 + -0.0 3,680,562 - -1.8 3,680,562 - -0.8 3,680,565 + -0.3 3,680,565 + -0.6 3,680,565 + +0.2 3,680,566 - +2.3 3,680,566 - -0.6 3,680,566 - -1.3 3,680,566 - -0.6 3,680,566 - -0.8 3,680,567 + -0.2 3,680,568 - -1.4 3,680,568 - +0.1 3,680,568 - -0.8 3,680,568 - +0.0 3,680,570 - -1.1 3,680,570 - +0.3 3,680,575 + -0.3 3,680,575 + -0.7 3,680,575 + +0.0 3,680,575 + -0.5 3,680,575 + -0.6 3,680,575 + -0.6 3,680,575 + -0.5 3,680,576 - +0.3 3,680,576 - -0.8 3,680,576 - -0.9 3,680,587 - -0.9 3,680,635 - CA264_15760 0.12 -1.3 3,680,635 - CA264_15760 0.12 -0.6 3,680,804 + CA264_15760 0.61 -1.4 3,680,936 + +1.1 3,680,936 + -0.2 3,680,993 + -0.9 3,681,037 + -0.9 3,681,038 - +0.4 3,681,042 - -1.1 3,681,061 + CA264_15765 0.14 -0.3 3,681,061 + CA264_15765 0.14 -0.6 3,681,061 + CA264_15765 0.14 -0.7 3,681,093 - CA264_15765 0.23 +0.1 3,681,111 - CA264_15765 0.28 -0.4 3,681,177 + CA264_15765 0.45 -0.7 3,681,197 + CA264_15765 0.50 -0.4 3,681,239 - CA264_15765 0.61 -1.0 3,681,248 + CA264_15765 0.64 -0.0 3,681,248 + CA264_15765 0.64 -0.7 3,681,352 - -0.4 3,681,352 - -1.9 3,681,352 - +0.1 3,681,359 + -0.9 3,681,375 - -0.6 3,681,387 - -0.5 3,681,388 + -0.1 3,681,409 - -0.5 3,681,418 - -0.3 3,681,543 - +0.4 3,681,779 - CA264_15770 0.20 -0.7 3,681,819 + CA264_15770 0.23 -0.2 3,681,843 - CA264_15770 0.26 -1.1 3,681,845 - CA264_15770 0.26 -0.6 3,681,853 + CA264_15770 0.27 -0.7 3,681,857 + CA264_15770 0.27 -0.3 3,681,858 - CA264_15770 0.27 +0.6 3,681,863 + CA264_15770 0.27 -0.7 3,681,863 + CA264_15770 0.27 +0.1 3,681,864 - CA264_15770 0.28 -0.1
Or see this region's nucleotide sequence