Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13770 and CA264_13775 are separated by 775 nucleotides CA264_13775 and CA264_13780 are separated by 163 nucleotides
CA264_13770: CA264_13770 - DNA starvation/stationary phase protection protein, at 3,217,467 to 3,217,940
_13770
CA264_13775: CA264_13775 - hypothetical protein, at 3,218,716 to 3,220,203
_13775
CA264_13780: CA264_13780 - ribonuclease Y, at 3,220,367 to 3,221,965
_13780
Position (kb)
3218
3219
3220
3221 Strain fitness (log2 ratio)
-2
-1
0
1 at 3217.722 kb on + strand, within CA264_13770 at 3217.725 kb on - strand, within CA264_13770 at 3217.725 kb on - strand, within CA264_13770 at 3217.933 kb on + strand at 3217.934 kb on - strand at 3217.938 kb on + strand at 3217.938 kb on + strand at 3217.939 kb on - strand at 3218.032 kb on - strand at 3218.057 kb on - strand at 3218.057 kb on - strand at 3218.057 kb on - strand at 3218.060 kb on + strand at 3218.060 kb on + strand at 3218.061 kb on - strand at 3218.061 kb on - strand at 3218.062 kb on + strand at 3218.067 kb on + strand at 3218.068 kb on - strand at 3218.078 kb on + strand at 3218.078 kb on + strand at 3218.082 kb on + strand at 3218.102 kb on + strand at 3218.136 kb on + strand at 3218.189 kb on - strand at 3218.197 kb on - strand at 3218.248 kb on - strand at 3218.293 kb on - strand at 3218.298 kb on - strand at 3218.298 kb on - strand at 3218.310 kb on + strand at 3218.311 kb on - strand at 3218.316 kb on + strand at 3218.317 kb on - strand at 3218.317 kb on - strand at 3218.321 kb on + strand at 3218.322 kb on - strand at 3218.328 kb on - strand at 3218.401 kb on + strand at 3218.434 kb on + strand at 3218.434 kb on + strand at 3218.434 kb on + strand at 3218.469 kb on + strand at 3218.487 kb on - strand at 3218.488 kb on + strand at 3218.489 kb on - strand at 3218.489 kb on - strand at 3218.536 kb on + strand at 3218.552 kb on + strand at 3218.552 kb on + strand at 3218.588 kb on + strand at 3218.589 kb on - strand at 3218.631 kb on + strand at 3218.698 kb on + strand at 3218.699 kb on - strand at 3218.699 kb on - strand at 3218.708 kb on + strand at 3218.708 kb on + strand at 3218.708 kb on + strand at 3218.708 kb on + strand at 3218.709 kb on - strand at 3218.709 kb on - strand at 3218.709 kb on - strand at 3218.709 kb on - strand at 3218.710 kb on + strand at 3218.710 kb on + strand at 3218.711 kb on - strand at 3218.765 kb on - strand at 3218.768 kb on + strand at 3218.769 kb on - strand at 3218.769 kb on - strand at 3218.796 kb on - strand at 3218.803 kb on - strand at 3218.928 kb on + strand, within CA264_13775 at 3218.932 kb on - strand, within CA264_13775 at 3218.986 kb on + strand, within CA264_13775 at 3219.020 kb on - strand, within CA264_13775 at 3219.041 kb on + strand, within CA264_13775 at 3219.041 kb on + strand, within CA264_13775 at 3219.042 kb on - strand, within CA264_13775 at 3219.042 kb on - strand, within CA264_13775 at 3219.260 kb on + strand, within CA264_13775 at 3219.261 kb on - strand, within CA264_13775 at 3219.261 kb on - strand, within CA264_13775 at 3219.297 kb on - strand, within CA264_13775 at 3219.307 kb on + strand, within CA264_13775 at 3219.308 kb on - strand, within CA264_13775 at 3219.308 kb on - strand, within CA264_13775 at 3219.308 kb on - strand, within CA264_13775 at 3219.316 kb on + strand, within CA264_13775 at 3219.316 kb on + strand, within CA264_13775 at 3219.316 kb on + strand, within CA264_13775 at 3219.316 kb on + strand, within CA264_13775 at 3219.316 kb on + strand, within CA264_13775 at 3219.316 kb on + strand, within CA264_13775 at 3219.317 kb on - strand, within CA264_13775 at 3219.317 kb on - strand, within CA264_13775 at 3219.344 kb on - strand, within CA264_13775 at 3219.439 kb on + strand, within CA264_13775 at 3219.471 kb on + strand, within CA264_13775 at 3219.474 kb on + strand, within CA264_13775 at 3219.474 kb on + strand, within CA264_13775 at 3219.474 kb on + strand, within CA264_13775 at 3219.482 kb on + strand, within CA264_13775 at 3219.499 kb on - strand, within CA264_13775 at 3219.508 kb on + strand, within CA264_13775 at 3219.509 kb on - strand, within CA264_13775 at 3219.546 kb on - strand, within CA264_13775 at 3219.598 kb on - strand, within CA264_13775 at 3219.598 kb on - strand, within CA264_13775 at 3219.631 kb on - strand, within CA264_13775 at 3219.662 kb on + strand, within CA264_13775 at 3219.801 kb on + strand, within CA264_13775 at 3219.896 kb on + strand, within CA264_13775 at 3219.912 kb on - strand, within CA264_13775 at 3219.912 kb on - strand, within CA264_13775 at 3219.912 kb on - strand, within CA264_13775 at 3219.955 kb on - strand, within CA264_13775 at 3219.955 kb on - strand, within CA264_13775 at 3219.998 kb on - strand, within CA264_13775 at 3219.998 kb on - strand, within CA264_13775 at 3219.998 kb on - strand, within CA264_13775 at 3220.016 kb on + strand, within CA264_13775 at 3220.054 kb on - strand, within CA264_13775 at 3220.171 kb on + strand at 3220.171 kb on + strand at 3220.171 kb on + strand at 3220.171 kb on + strand at 3220.171 kb on + strand at 3220.172 kb on - strand at 3220.172 kb on - strand at 3220.172 kb on - strand at 3220.172 kb on - strand at 3220.175 kb on + strand at 3220.176 kb on - strand at 3220.195 kb on - strand at 3220.202 kb on - strand at 3220.295 kb on - strand at 3220.352 kb on - strand at 3220.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 3,217,722 + CA264_13770 0.54 -0.9 3,217,725 - CA264_13770 0.54 -0.4 3,217,725 - CA264_13770 0.54 +0.2 3,217,933 + +0.1 3,217,934 - -1.0 3,217,938 + -1.9 3,217,938 + -1.4 3,217,939 - -0.3 3,218,032 - -0.2 3,218,057 - -0.2 3,218,057 - -0.2 3,218,057 - -1.3 3,218,060 + -1.4 3,218,060 + +0.5 3,218,061 - -0.4 3,218,061 - -0.2 3,218,062 + +1.1 3,218,067 + +0.1 3,218,068 - -0.3 3,218,078 + +0.1 3,218,078 + -0.9 3,218,082 + -0.7 3,218,102 + -0.0 3,218,136 + -0.5 3,218,189 - -0.7 3,218,197 - -1.3 3,218,248 - -0.3 3,218,293 - -0.1 3,218,298 - -2.0 3,218,298 - +0.1 3,218,310 + -0.5 3,218,311 - +0.3 3,218,316 + -0.3 3,218,317 - -1.7 3,218,317 - -0.4 3,218,321 + -1.4 3,218,322 - -1.9 3,218,328 - -0.9 3,218,401 + -0.7 3,218,434 + -2.0 3,218,434 + -0.7 3,218,434 + +0.4 3,218,469 + -0.3 3,218,487 - -0.0 3,218,488 + -0.7 3,218,489 - -0.3 3,218,489 - -0.6 3,218,536 + -1.4 3,218,552 + -0.6 3,218,552 + -1.9 3,218,588 + -0.5 3,218,589 - -0.1 3,218,631 + -0.8 3,218,698 + -1.1 3,218,699 - -1.2 3,218,699 - -0.3 3,218,708 + -0.2 3,218,708 + -0.6 3,218,708 + -0.2 3,218,708 + -0.7 3,218,709 - +0.8 3,218,709 - -0.1 3,218,709 - +0.4 3,218,709 - -0.1 3,218,710 + -0.9 3,218,710 + +0.3 3,218,711 - -0.3 3,218,765 - -1.0 3,218,768 + -0.2 3,218,769 - -0.1 3,218,769 - +1.3 3,218,796 - +1.1 3,218,803 - -0.6 3,218,928 + CA264_13775 0.14 -1.0 3,218,932 - CA264_13775 0.15 +0.2 3,218,986 + CA264_13775 0.18 +0.1 3,219,020 - CA264_13775 0.20 -0.2 3,219,041 + CA264_13775 0.22 -1.3 3,219,041 + CA264_13775 0.22 +0.8 3,219,042 - CA264_13775 0.22 +0.1 3,219,042 - CA264_13775 0.22 +0.3 3,219,260 + CA264_13775 0.37 +0.2 3,219,261 - CA264_13775 0.37 -0.2 3,219,261 - CA264_13775 0.37 -0.6 3,219,297 - CA264_13775 0.39 -0.6 3,219,307 + CA264_13775 0.40 -0.4 3,219,308 - CA264_13775 0.40 -0.4 3,219,308 - CA264_13775 0.40 -0.5 3,219,308 - CA264_13775 0.40 -0.1 3,219,316 + CA264_13775 0.40 -1.0 3,219,316 + CA264_13775 0.40 +0.2 3,219,316 + CA264_13775 0.40 -1.0 3,219,316 + CA264_13775 0.40 +0.5 3,219,316 + CA264_13775 0.40 +0.2 3,219,316 + CA264_13775 0.40 -0.0 3,219,317 - CA264_13775 0.40 -0.4 3,219,317 - CA264_13775 0.40 +0.6 3,219,344 - CA264_13775 0.42 -0.6 3,219,439 + CA264_13775 0.49 +0.6 3,219,471 + CA264_13775 0.51 -1.3 3,219,474 + CA264_13775 0.51 -1.9 3,219,474 + CA264_13775 0.51 -1.2 3,219,474 + CA264_13775 0.51 -1.1 3,219,482 + CA264_13775 0.51 +1.7 3,219,499 - CA264_13775 0.53 -0.9 3,219,508 + CA264_13775 0.53 -0.7 3,219,509 - CA264_13775 0.53 -0.4 3,219,546 - CA264_13775 0.56 +0.5 3,219,598 - CA264_13775 0.59 -0.2 3,219,598 - CA264_13775 0.59 -0.2 3,219,631 - CA264_13775 0.61 -0.4 3,219,662 + CA264_13775 0.64 -1.4 3,219,801 + CA264_13775 0.73 -1.1 3,219,896 + CA264_13775 0.79 -0.7 3,219,912 - CA264_13775 0.80 -0.9 3,219,912 - CA264_13775 0.80 -1.2 3,219,912 - CA264_13775 0.80 -0.2 3,219,955 - CA264_13775 0.83 -0.8 3,219,955 - CA264_13775 0.83 -0.8 3,219,998 - CA264_13775 0.86 -1.5 3,219,998 - CA264_13775 0.86 -0.7 3,219,998 - CA264_13775 0.86 +1.3 3,220,016 + CA264_13775 0.87 -1.3 3,220,054 - CA264_13775 0.90 -0.6 3,220,171 + -1.4 3,220,171 + -0.1 3,220,171 + -0.5 3,220,171 + -0.0 3,220,171 + -0.8 3,220,172 - +0.7 3,220,172 - -0.0 3,220,172 - -0.4 3,220,172 - -1.2 3,220,175 + -0.2 3,220,176 - -0.3 3,220,195 - -0.5 3,220,202 - -2.3 3,220,295 - +0.2 3,220,352 - -0.8 3,220,360 - +0.3
Or see this region's nucleotide sequence