Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13655

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13645 and CA264_13650 are separated by 260 nucleotidesCA264_13650 and CA264_13655 are separated by 247 nucleotidesCA264_13655 and CA264_13660 are separated by 243 nucleotides CA264_13645: CA264_13645 - hypothetical protein, at 3,190,865 to 3,191,122 _13645 CA264_13650: CA264_13650 - hypothetical protein, at 3,191,383 to 3,191,694 _13650 CA264_13655: CA264_13655 - DNA metabolism protein, at 3,191,942 to 3,192,718 _13655 CA264_13660: CA264_13660 - putative DNA modification/repair radical SAM protein, at 3,192,962 to 3,194,227 _13660 Position (kb) 3191 3192 3193Strain fitness (log2 ratio) -2 -1 0 1at 3190.959 kb on - strand, within CA264_13645at 3191.032 kb on + strand, within CA264_13645at 3191.033 kb on - strand, within CA264_13645at 3191.105 kb on + strandat 3191.133 kb on - strandat 3191.137 kb on + strandat 3191.157 kb on + strandat 3191.217 kb on + strandat 3191.217 kb on + strandat 3191.217 kb on + strandat 3191.218 kb on - strandat 3191.221 kb on - strandat 3191.222 kb on + strandat 3191.223 kb on - strandat 3191.223 kb on - strandat 3191.226 kb on + strandat 3191.261 kb on + strandat 3191.323 kb on + strandat 3191.324 kb on - strandat 3191.362 kb on - strandat 3191.377 kb on - strandat 3191.390 kb on + strandat 3191.391 kb on - strandat 3191.520 kb on + strand, within CA264_13650at 3191.564 kb on - strand, within CA264_13650at 3191.585 kb on + strand, within CA264_13650at 3191.585 kb on + strand, within CA264_13650at 3191.717 kb on - strandat 3191.825 kb on - strandat 3191.839 kb on - strandat 3191.840 kb on + strandat 3191.840 kb on + strandat 3191.841 kb on - strandat 3191.841 kb on - strandat 3191.841 kb on - strandat 3191.843 kb on - strandat 3191.844 kb on + strandat 3191.844 kb on + strandat 3191.845 kb on - strandat 3191.845 kb on - strandat 3191.848 kb on + strandat 3191.848 kb on + strandat 3191.848 kb on + strandat 3191.856 kb on + strandat 3191.856 kb on + strandat 3191.858 kb on + strandat 3191.944 kb on - strandat 3191.944 kb on - strandat 3191.976 kb on + strandat 3192.037 kb on + strand, within CA264_13655at 3192.038 kb on - strand, within CA264_13655at 3192.080 kb on - strand, within CA264_13655at 3192.158 kb on + strand, within CA264_13655at 3192.168 kb on - strand, within CA264_13655at 3192.175 kb on - strand, within CA264_13655at 3192.204 kb on + strand, within CA264_13655at 3192.402 kb on + strand, within CA264_13655at 3192.403 kb on - strand, within CA264_13655at 3192.415 kb on + strand, within CA264_13655at 3192.416 kb on - strand, within CA264_13655at 3192.443 kb on + strand, within CA264_13655at 3192.444 kb on - strand, within CA264_13655at 3192.444 kb on - strand, within CA264_13655at 3192.448 kb on - strand, within CA264_13655at 3192.448 kb on - strand, within CA264_13655at 3192.489 kb on + strand, within CA264_13655at 3192.490 kb on - strand, within CA264_13655at 3192.493 kb on + strand, within CA264_13655at 3192.493 kb on + strand, within CA264_13655at 3192.493 kb on + strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.494 kb on - strand, within CA264_13655at 3192.495 kb on + strand, within CA264_13655at 3192.495 kb on + strand, within CA264_13655at 3192.495 kb on + strand, within CA264_13655at 3192.498 kb on + strand, within CA264_13655at 3192.499 kb on - strand, within CA264_13655at 3192.499 kb on - strand, within CA264_13655at 3192.601 kb on + strand, within CA264_13655at 3192.601 kb on + strand, within CA264_13655at 3192.602 kb on - strand, within CA264_13655at 3192.602 kb on - strand, within CA264_13655at 3192.657 kb on + strandat 3192.708 kb on + strandat 3192.708 kb on + strandat 3192.735 kb on + strandat 3192.881 kb on - strandat 3192.901 kb on + strandat 3192.903 kb on + strandat 3192.903 kb on + strandat 3192.904 kb on - strandat 3193.359 kb on + strand, within CA264_13660at 3193.600 kb on + strand, within CA264_13660at 3193.672 kb on + strand, within CA264_13660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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3,190,959 - CA264_13645 0.36 -0.3
3,191,032 + CA264_13645 0.65 +0.7
3,191,033 - CA264_13645 0.65 -0.6
3,191,105 + -0.6
3,191,133 - +0.2
3,191,137 + -0.6
3,191,157 + -0.1
3,191,217 + -1.2
3,191,217 + +0.8
3,191,217 + -0.2
3,191,218 - +0.2
3,191,221 - +0.1
3,191,222 + +1.0
3,191,223 - -0.8
3,191,223 - -0.7
3,191,226 + -0.3
3,191,261 + +0.2
3,191,323 + -0.6
3,191,324 - -0.4
3,191,362 - +0.6
3,191,377 - +0.2
3,191,390 + -0.2
3,191,391 - -0.2
3,191,520 + CA264_13650 0.44 +0.9
3,191,564 - CA264_13650 0.58 -1.1
3,191,585 + CA264_13650 0.65 -1.7
3,191,585 + CA264_13650 0.65 -0.8
3,191,717 - -0.6
3,191,825 - -0.7
3,191,839 - -1.5
3,191,840 + -0.4
3,191,840 + -0.5
3,191,841 - -1.1
3,191,841 - -0.4
3,191,841 - +0.8
3,191,843 - +0.4
3,191,844 + -0.6
3,191,844 + -0.7
3,191,845 - -1.1
3,191,845 - -0.4
3,191,848 + -0.7
3,191,848 + -0.5
3,191,848 + -0.3
3,191,856 + -1.3
3,191,856 + -0.9
3,191,858 + -0.8
3,191,944 - -0.6
3,191,944 - -0.0
3,191,976 + +1.2
3,192,037 + CA264_13655 0.12 +0.2
3,192,038 - CA264_13655 0.12 +0.2
3,192,080 - CA264_13655 0.18 -0.5
3,192,158 + CA264_13655 0.28 -1.6
3,192,168 - CA264_13655 0.29 +0.4
3,192,175 - CA264_13655 0.30 -2.0
3,192,204 + CA264_13655 0.34 -0.7
3,192,402 + CA264_13655 0.59 +0.1
3,192,403 - CA264_13655 0.59 +1.2
3,192,415 + CA264_13655 0.61 -1.3
3,192,416 - CA264_13655 0.61 -0.3
3,192,443 + CA264_13655 0.64 -0.3
3,192,444 - CA264_13655 0.65 -0.7
3,192,444 - CA264_13655 0.65 -0.1
3,192,448 - CA264_13655 0.65 -0.7
3,192,448 - CA264_13655 0.65 +0.5
3,192,489 + CA264_13655 0.70 -0.2
3,192,490 - CA264_13655 0.71 +0.3
3,192,493 + CA264_13655 0.71 -1.1
3,192,493 + CA264_13655 0.71 -1.8
3,192,493 + CA264_13655 0.71 -0.5
3,192,494 - CA264_13655 0.71 -1.1
3,192,494 - CA264_13655 0.71 -0.4
3,192,494 - CA264_13655 0.71 +0.8
3,192,494 - CA264_13655 0.71 -1.0
3,192,495 + CA264_13655 0.71 -0.1
3,192,495 + CA264_13655 0.71 -0.5
3,192,495 + CA264_13655 0.71 -0.9
3,192,498 + CA264_13655 0.72 -0.8
3,192,499 - CA264_13655 0.72 +0.8
3,192,499 - CA264_13655 0.72 -1.3
3,192,601 + CA264_13655 0.85 -0.4
3,192,601 + CA264_13655 0.85 -1.2
3,192,602 - CA264_13655 0.85 -0.4
3,192,602 - CA264_13655 0.85 -0.3
3,192,657 + -0.7
3,192,708 + -1.9
3,192,708 + -1.6
3,192,735 + -0.4
3,192,881 - +1.2
3,192,901 + +0.2
3,192,903 + -0.3
3,192,903 + -1.1
3,192,904 - -1.6
3,193,359 + CA264_13660 0.31 +0.6
3,193,600 + CA264_13660 0.50 -0.7
3,193,672 + CA264_13660 0.56 -0.9

Or see this region's nucleotide sequence