Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12075 and CA264_12080 are separated by 3 nucleotides CA264_12080 and CA264_12085 are separated by 3 nucleotides CA264_12085 and CA264_12090 overlap by 4 nucleotides CA264_12090 and CA264_12095 are separated by 101 nucleotides
CA264_12075: CA264_12075 - PAS domain S-box protein, at 2,814,014 to 2,819,236
_12075
CA264_12080: CA264_12080 - response regulator, at 2,819,240 to 2,819,620
_12080
CA264_12085: CA264_12085 - hypothetical protein, at 2,819,624 to 2,819,899
_12085
CA264_12090: CA264_12090 - hydrolase, at 2,819,896 to 2,820,657
_12090
CA264_12095: CA264_12095 - hypothetical protein, at 2,820,759 to 2,822,327
_12095
Position (kb)
2819
2820
2821 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2818.921 kb on - strand at 2818.954 kb on + strand at 2818.966 kb on - strand at 2819.028 kb on + strand at 2819.029 kb on - strand at 2819.037 kb on - strand at 2819.069 kb on - strand at 2819.095 kb on + strand at 2819.096 kb on - strand at 2819.125 kb on - strand at 2819.158 kb on + strand at 2819.160 kb on + strand at 2819.160 kb on + strand at 2819.160 kb on + strand at 2819.160 kb on + strand at 2819.161 kb on - strand at 2819.161 kb on - strand at 2819.224 kb on + strand at 2819.225 kb on - strand at 2819.226 kb on + strand at 2819.226 kb on + strand at 2819.534 kb on - strand, within CA264_12080 at 2819.607 kb on - strand at 2819.609 kb on - strand at 2819.771 kb on + strand, within CA264_12085 at 2819.772 kb on - strand, within CA264_12085 at 2819.903 kb on + strand at 2819.903 kb on + strand at 2819.903 kb on + strand at 2820.254 kb on - strand, within CA264_12090 at 2820.390 kb on + strand, within CA264_12090 at 2820.391 kb on - strand, within CA264_12090 at 2820.391 kb on - strand, within CA264_12090 at 2820.394 kb on + strand, within CA264_12090 at 2820.394 kb on + strand, within CA264_12090 at 2820.395 kb on - strand, within CA264_12090 at 2820.553 kb on + strand, within CA264_12090 at 2820.554 kb on - strand, within CA264_12090 at 2820.620 kb on + strand at 2820.621 kb on - strand at 2820.654 kb on - strand at 2820.673 kb on + strand at 2820.755 kb on + strand at 2820.755 kb on + strand at 2820.755 kb on - strand at 2820.756 kb on - strand at 2820.767 kb on - strand at 2820.767 kb on - strand at 2820.767 kb on - strand at 2820.767 kb on - strand at 2820.774 kb on + strand at 2820.790 kb on + strand at 2820.864 kb on - strand at 2820.864 kb on - strand at 2820.897 kb on + strand at 2821.047 kb on + strand, within CA264_12095 at 2821.083 kb on - strand, within CA264_12095 at 2821.083 kb on - strand, within CA264_12095 at 2821.111 kb on + strand, within CA264_12095 at 2821.111 kb on + strand, within CA264_12095 at 2821.112 kb on - strand, within CA264_12095 at 2821.112 kb on - strand, within CA264_12095 at 2821.112 kb on - strand, within CA264_12095 at 2821.116 kb on + strand, within CA264_12095 at 2821.117 kb on - strand, within CA264_12095 at 2821.152 kb on - strand, within CA264_12095 at 2821.252 kb on + strand, within CA264_12095 at 2821.253 kb on - strand, within CA264_12095 at 2821.253 kb on - strand, within CA264_12095 at 2821.255 kb on - strand, within CA264_12095 at 2821.255 kb on - strand, within CA264_12095 at 2821.259 kb on + strand, within CA264_12095 at 2821.284 kb on + strand, within CA264_12095 at 2821.380 kb on + strand, within CA264_12095 at 2821.380 kb on + strand, within CA264_12095 at 2821.380 kb on + strand, within CA264_12095 at 2821.380 kb on + strand, within CA264_12095 at 2821.381 kb on - strand, within CA264_12095 at 2821.435 kb on + strand, within CA264_12095 at 2821.442 kb on + strand, within CA264_12095 at 2821.442 kb on + strand, within CA264_12095 at 2821.443 kb on - strand, within CA264_12095 at 2821.443 kb on - strand, within CA264_12095 at 2821.443 kb on - strand, within CA264_12095 at 2821.443 kb on - strand, within CA264_12095 at 2821.446 kb on + strand, within CA264_12095 at 2821.447 kb on - strand, within CA264_12095 at 2821.476 kb on + strand, within CA264_12095 at 2821.476 kb on + strand, within CA264_12095 at 2821.488 kb on + strand, within CA264_12095 at 2821.488 kb on + strand, within CA264_12095 at 2821.488 kb on + strand, within CA264_12095 at 2821.492 kb on + strand, within CA264_12095
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 2,818,921 - +0.1 2,818,954 + -1.9 2,818,966 - -1.2 2,819,028 + -0.0 2,819,029 - -0.9 2,819,037 - +0.4 2,819,069 - -0.9 2,819,095 + -0.1 2,819,096 - -0.4 2,819,125 - +0.3 2,819,158 + -0.0 2,819,160 + +0.0 2,819,160 + +0.3 2,819,160 + -1.1 2,819,160 + -0.9 2,819,161 - -2.1 2,819,161 - -0.6 2,819,224 + -0.3 2,819,225 - -0.4 2,819,226 + -1.6 2,819,226 + -1.7 2,819,534 - CA264_12080 0.77 -0.9 2,819,607 - -0.8 2,819,609 - -3.2 2,819,771 + CA264_12085 0.53 -0.7 2,819,772 - CA264_12085 0.54 -1.2 2,819,903 + -1.1 2,819,903 + -0.2 2,819,903 + -0.5 2,820,254 - CA264_12090 0.47 -0.9 2,820,390 + CA264_12090 0.65 +0.1 2,820,391 - CA264_12090 0.65 -0.0 2,820,391 - CA264_12090 0.65 -2.8 2,820,394 + CA264_12090 0.65 -1.2 2,820,394 + CA264_12090 0.65 -0.9 2,820,395 - CA264_12090 0.65 -2.4 2,820,553 + CA264_12090 0.86 +1.0 2,820,554 - CA264_12090 0.86 -1.3 2,820,620 + -1.7 2,820,621 - +0.7 2,820,654 - -0.5 2,820,673 + +0.5 2,820,755 + -0.2 2,820,755 + -0.2 2,820,755 - -2.0 2,820,756 - -2.1 2,820,767 - +0.8 2,820,767 - -1.2 2,820,767 - -0.9 2,820,767 - +0.0 2,820,774 + -0.2 2,820,790 + -0.8 2,820,864 - +0.3 2,820,864 - -0.9 2,820,897 + +0.7 2,821,047 + CA264_12095 0.18 -1.0 2,821,083 - CA264_12095 0.21 -0.3 2,821,083 - CA264_12095 0.21 +2.4 2,821,111 + CA264_12095 0.22 +0.4 2,821,111 + CA264_12095 0.22 -0.4 2,821,112 - CA264_12095 0.22 +0.3 2,821,112 - CA264_12095 0.22 -0.6 2,821,112 - CA264_12095 0.22 -0.0 2,821,116 + CA264_12095 0.23 -0.5 2,821,117 - CA264_12095 0.23 -0.0 2,821,152 - CA264_12095 0.25 -0.2 2,821,252 + CA264_12095 0.31 -1.1 2,821,253 - CA264_12095 0.31 -1.5 2,821,253 - CA264_12095 0.31 -0.2 2,821,255 - CA264_12095 0.32 +0.2 2,821,255 - CA264_12095 0.32 +0.8 2,821,259 + CA264_12095 0.32 -0.7 2,821,284 + CA264_12095 0.33 +0.1 2,821,380 + CA264_12095 0.40 +0.6 2,821,380 + CA264_12095 0.40 -0.5 2,821,380 + CA264_12095 0.40 +0.4 2,821,380 + CA264_12095 0.40 -0.8 2,821,381 - CA264_12095 0.40 -0.7 2,821,435 + CA264_12095 0.43 -0.7 2,821,442 + CA264_12095 0.44 -0.4 2,821,442 + CA264_12095 0.44 -0.6 2,821,443 - CA264_12095 0.44 -0.1 2,821,443 - CA264_12095 0.44 +0.4 2,821,443 - CA264_12095 0.44 -0.8 2,821,443 - CA264_12095 0.44 -0.0 2,821,446 + CA264_12095 0.44 -1.0 2,821,447 - CA264_12095 0.44 -0.3 2,821,476 + CA264_12095 0.46 -1.3 2,821,476 + CA264_12095 0.46 -0.5 2,821,488 + CA264_12095 0.46 -0.2 2,821,488 + CA264_12095 0.46 -0.3 2,821,488 + CA264_12095 0.46 +0.3 2,821,492 + CA264_12095 0.47 -0.5
Or see this region's nucleotide sequence