Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11055

Experiment: m.b. Lomefloxacin 0.004 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11045 and CA264_11050 are separated by 96 nucleotidesCA264_11050 and CA264_11055 are separated by 116 nucleotidesCA264_11055 and CA264_11060 are separated by 119 nucleotidesCA264_11060 and CA264_11065 are separated by 14 nucleotidesCA264_11065 and CA264_11070 are separated by 11 nucleotides CA264_11045: CA264_11045 - threonylcarbamoyl-AMP synthase, at 2,551,108 to 2,551,680 _11045 CA264_11050: CA264_11050 - methylmalonyl-CoA epimerase, at 2,551,777 to 2,552,178 _11050 CA264_11055: CA264_11055 - cysteine desulfurase, at 2,552,295 to 2,553,509 _11055 CA264_11060: CA264_11060 - iron-sulfur cluster scaffold-like protein, at 2,553,629 to 2,554,042 _11060 CA264_11065: CA264_11065 - hypothetical protein, at 2,554,057 to 2,554,464 _11065 CA264_11070: CA264_11070 - iron-sulfur cluster assembly accessory protein, at 2,554,476 to 2,554,802 _11070 Position (kb) 2552 2553 2554Strain fitness (log2 ratio) -1 0 1at 2551.669 kb on + strandat 2551.783 kb on + strandat 2551.924 kb on + strand, within CA264_11050at 2551.924 kb on + strand, within CA264_11050at 2551.924 kb on + strand, within CA264_11050at 2551.947 kb on + strand, within CA264_11050at 2551.947 kb on + strand, within CA264_11050at 2551.948 kb on - strand, within CA264_11050at 2552.038 kb on + strand, within CA264_11050at 2552.090 kb on + strand, within CA264_11050at 2552.090 kb on + strand, within CA264_11050at 2552.161 kb on - strandat 2552.167 kb on + strandat 2552.168 kb on - strandat 2552.190 kb on - strandat 2552.202 kb on + strandat 2552.239 kb on + strandat 2553.482 kb on + strandat 2553.594 kb on - strandat 2554.121 kb on + strand, within CA264_11065at 2554.127 kb on + strand, within CA264_11065at 2554.127 kb on + strand, within CA264_11065at 2554.127 kb on + strand, within CA264_11065at 2554.127 kb on + strand, within CA264_11065at 2554.191 kb on + strand, within CA264_11065at 2554.191 kb on + strand, within CA264_11065at 2554.312 kb on + strand, within CA264_11065at 2554.375 kb on - strand, within CA264_11065at 2554.381 kb on + strand, within CA264_11065at 2554.381 kb on + strand, within CA264_11065at 2554.381 kb on + strand, within CA264_11065at 2554.381 kb on + strand, within CA264_11065at 2554.382 kb on - strand, within CA264_11065at 2554.400 kb on + strand, within CA264_11065at 2554.406 kb on - strand, within CA264_11065at 2554.425 kb on + strandat 2554.425 kb on + strandat 2554.425 kb on + strandat 2554.425 kb on + strandat 2554.426 kb on - strandat 2554.427 kb on + strandat 2554.446 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
remove
2,551,669 + +0.1
2,551,783 + -0.5
2,551,924 + CA264_11050 0.37 -0.1
2,551,924 + CA264_11050 0.37 +1.7
2,551,924 + CA264_11050 0.37 +0.1
2,551,947 + CA264_11050 0.42 +0.9
2,551,947 + CA264_11050 0.42 -0.3
2,551,948 - CA264_11050 0.43 +1.2
2,552,038 + CA264_11050 0.65 -0.4
2,552,090 + CA264_11050 0.78 +0.7
2,552,090 + CA264_11050 0.78 -0.5
2,552,161 - +0.5
2,552,167 + +0.4
2,552,168 - +0.1
2,552,190 - -0.2
2,552,202 + +1.4
2,552,239 + +1.0
2,553,482 + +0.4
2,553,594 - +0.8
2,554,121 + CA264_11065 0.16 -0.4
2,554,127 + CA264_11065 0.17 +0.6
2,554,127 + CA264_11065 0.17 +0.7
2,554,127 + CA264_11065 0.17 +0.4
2,554,127 + CA264_11065 0.17 -1.4
2,554,191 + CA264_11065 0.33 +0.1
2,554,191 + CA264_11065 0.33 +0.9
2,554,312 + CA264_11065 0.62 +0.7
2,554,375 - CA264_11065 0.78 +1.0
2,554,381 + CA264_11065 0.79 -1.2
2,554,381 + CA264_11065 0.79 -0.8
2,554,381 + CA264_11065 0.79 -0.8
2,554,381 + CA264_11065 0.79 -0.5
2,554,382 - CA264_11065 0.80 -0.4
2,554,400 + CA264_11065 0.84 -0.2
2,554,406 - CA264_11065 0.86 -0.8
2,554,425 + -0.3
2,554,425 + -1.4
2,554,425 + -0.0
2,554,425 + -0.2
2,554,426 - -0.5
2,554,427 + -0.4
2,554,446 - +0.3

Or see this region's nucleotide sequence