Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09320

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09315 and CA264_09320 are separated by 82 nucleotidesCA264_09320 and CA264_09325 are separated by 271 nucleotides CA264_09315: CA264_09315 - DUF5009 domain-containing protein, at 2,178,346 to 2,179,509 _09315 CA264_09320: CA264_09320 - hypothetical protein, at 2,179,592 to 2,180,179 _09320 CA264_09325: CA264_09325 - methylglyoxal synthase, at 2,180,451 to 2,180,816 _09325 Position (kb) 2179 2180 2181Strain fitness (log2 ratio) -2 -1 0 1 2at 2178.646 kb on - strand, within CA264_09315at 2178.729 kb on + strand, within CA264_09315at 2178.773 kb on - strand, within CA264_09315at 2178.800 kb on - strand, within CA264_09315at 2178.823 kb on - strand, within CA264_09315at 2178.955 kb on + strand, within CA264_09315at 2179.051 kb on - strand, within CA264_09315at 2179.142 kb on + strand, within CA264_09315at 2179.142 kb on + strand, within CA264_09315at 2179.178 kb on - strand, within CA264_09315at 2179.178 kb on - strand, within CA264_09315at 2179.178 kb on - strand, within CA264_09315at 2179.179 kb on + strand, within CA264_09315at 2179.179 kb on + strand, within CA264_09315at 2179.180 kb on - strand, within CA264_09315at 2179.180 kb on - strand, within CA264_09315at 2179.225 kb on - strand, within CA264_09315at 2179.225 kb on - strand, within CA264_09315at 2179.265 kb on - strand, within CA264_09315at 2179.342 kb on - strand, within CA264_09315at 2179.344 kb on - strand, within CA264_09315at 2179.444 kb on + strandat 2179.444 kb on + strandat 2179.445 kb on - strandat 2179.445 kb on - strandat 2179.508 kb on - strandat 2179.508 kb on - strandat 2179.511 kb on - strandat 2179.512 kb on - strandat 2179.512 kb on - strandat 2179.512 kb on - strandat 2179.517 kb on + strandat 2179.518 kb on - strandat 2179.589 kb on + strandat 2179.602 kb on + strandat 2179.626 kb on + strandat 2179.677 kb on - strand, within CA264_09320at 2179.689 kb on + strand, within CA264_09320at 2179.740 kb on + strand, within CA264_09320at 2179.741 kb on - strand, within CA264_09320at 2179.741 kb on - strand, within CA264_09320at 2179.799 kb on - strand, within CA264_09320at 2179.837 kb on - strand, within CA264_09320at 2179.852 kb on + strand, within CA264_09320at 2179.853 kb on - strand, within CA264_09320at 2179.853 kb on - strand, within CA264_09320at 2179.873 kb on + strand, within CA264_09320at 2179.874 kb on - strand, within CA264_09320at 2179.978 kb on + strand, within CA264_09320at 2180.086 kb on - strand, within CA264_09320at 2180.147 kb on + strandat 2180.147 kb on + strandat 2180.148 kb on - strandat 2180.152 kb on + strandat 2180.152 kb on + strandat 2180.163 kb on - strandat 2180.220 kb on + strandat 2180.281 kb on + strandat 2180.282 kb on - strandat 2180.282 kb on - strandat 2180.284 kb on - strandat 2180.433 kb on + strandat 2180.433 kb on + strandat 2180.434 kb on - strandat 2180.464 kb on - strandat 2180.522 kb on + strand, within CA264_09325at 2180.527 kb on - strand, within CA264_09325at 2180.585 kb on + strand, within CA264_09325at 2180.596 kb on - strand, within CA264_09325at 2180.596 kb on - strand, within CA264_09325at 2180.797 kb on - strandat 2180.821 kb on + strandat 2180.822 kb on - strandat 2180.848 kb on + strandat 2180.849 kb on - strandat 2180.909 kb on - strandat 2180.942 kb on - strandat 2181.001 kb on + strandat 2181.010 kb on - strandat 2181.122 kb on + strandat 2181.150 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,178,646 - CA264_09315 0.26 -2.6
2,178,729 + CA264_09315 0.33 -1.1
2,178,773 - CA264_09315 0.37 +0.6
2,178,800 - CA264_09315 0.39 -1.1
2,178,823 - CA264_09315 0.41 -0.5
2,178,955 + CA264_09315 0.52 -0.1
2,179,051 - CA264_09315 0.61 +0.2
2,179,142 + CA264_09315 0.68 -1.5
2,179,142 + CA264_09315 0.68 +1.0
2,179,178 - CA264_09315 0.71 -0.5
2,179,178 - CA264_09315 0.71 +0.6
2,179,178 - CA264_09315 0.71 -0.4
2,179,179 + CA264_09315 0.72 +0.9
2,179,179 + CA264_09315 0.72 -1.4
2,179,180 - CA264_09315 0.72 -1.1
2,179,180 - CA264_09315 0.72 -0.8
2,179,225 - CA264_09315 0.76 +1.1
2,179,225 - CA264_09315 0.76 -1.1
2,179,265 - CA264_09315 0.79 +0.3
2,179,342 - CA264_09315 0.86 -1.4
2,179,344 - CA264_09315 0.86 -1.1
2,179,444 + -0.7
2,179,444 + -1.1
2,179,445 - +0.0
2,179,445 - -0.6
2,179,508 - +0.3
2,179,508 - +0.6
2,179,511 - +1.0
2,179,512 - -1.1
2,179,512 - -0.7
2,179,512 - -1.4
2,179,517 + -1.6
2,179,518 - -1.9
2,179,589 + +0.3
2,179,602 + +1.5
2,179,626 + -0.7
2,179,677 - CA264_09320 0.14 -0.9
2,179,689 + CA264_09320 0.16 -0.8
2,179,740 + CA264_09320 0.25 -1.3
2,179,741 - CA264_09320 0.25 -0.8
2,179,741 - CA264_09320 0.25 +2.1
2,179,799 - CA264_09320 0.35 +0.2
2,179,837 - CA264_09320 0.42 +0.3
2,179,852 + CA264_09320 0.44 +0.9
2,179,853 - CA264_09320 0.44 -0.8
2,179,853 - CA264_09320 0.44 -0.8
2,179,873 + CA264_09320 0.48 +1.5
2,179,874 - CA264_09320 0.48 +1.7
2,179,978 + CA264_09320 0.66 -0.4
2,180,086 - CA264_09320 0.84 -0.6
2,180,147 + +0.6
2,180,147 + -0.1
2,180,148 - -2.4
2,180,152 + -0.4
2,180,152 + +0.1
2,180,163 - +0.2
2,180,220 + -1.4
2,180,281 + -0.4
2,180,282 - -0.3
2,180,282 - -0.7
2,180,284 - -1.1
2,180,433 + +0.9
2,180,433 + -0.3
2,180,434 - -0.2
2,180,464 - -0.7
2,180,522 + CA264_09325 0.19 -1.7
2,180,527 - CA264_09325 0.21 -2.3
2,180,585 + CA264_09325 0.37 +0.7
2,180,596 - CA264_09325 0.40 +1.0
2,180,596 - CA264_09325 0.40 -1.0
2,180,797 - -0.9
2,180,821 + -1.1
2,180,822 - -0.2
2,180,848 + -0.9
2,180,849 - -0.5
2,180,909 - -0.4
2,180,942 - -1.2
2,181,001 + +0.3
2,181,010 - -0.4
2,181,122 + -0.8
2,181,150 - -0.5

Or see this region's nucleotide sequence