Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09085

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09080 and CA264_09085 are separated by 3 nucleotidesCA264_09085 and CA264_09090 are separated by 265 nucleotides CA264_09080: CA264_09080 - FUSC family protein, at 2,125,110 to 2,126,162 _09080 CA264_09085: CA264_09085 - sugar hydrolase, at 2,126,166 to 2,128,481 _09085 CA264_09090: CA264_09090 - NADPH dehydrogenase NamA, at 2,128,747 to 2,129,823 _09090 Position (kb) 2126 2127 2128 2129Strain fitness (log2 ratio) -3 -2 -1 0 1at 2125.230 kb on + strand, within CA264_09080at 2125.501 kb on - strand, within CA264_09080at 2125.604 kb on + strand, within CA264_09080at 2125.605 kb on - strand, within CA264_09080at 2125.607 kb on - strand, within CA264_09080at 2125.734 kb on - strand, within CA264_09080at 2125.847 kb on + strand, within CA264_09080at 2125.887 kb on - strand, within CA264_09080at 2125.966 kb on + strand, within CA264_09080at 2125.967 kb on - strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.032 kb on + strand, within CA264_09080at 2126.033 kb on - strand, within CA264_09080at 2126.033 kb on - strand, within CA264_09080at 2126.033 kb on - strand, within CA264_09080at 2126.210 kb on - strandat 2126.210 kb on - strandat 2126.210 kb on - strandat 2126.299 kb on + strandat 2126.299 kb on + strandat 2126.309 kb on + strandat 2126.361 kb on + strandat 2126.361 kb on + strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.362 kb on - strandat 2126.509 kb on + strand, within CA264_09085at 2126.510 kb on - strand, within CA264_09085at 2126.510 kb on - strand, within CA264_09085at 2126.520 kb on + strand, within CA264_09085at 2126.573 kb on - strand, within CA264_09085at 2126.579 kb on - strand, within CA264_09085at 2126.614 kb on + strand, within CA264_09085at 2126.615 kb on - strand, within CA264_09085at 2126.615 kb on - strand, within CA264_09085at 2126.662 kb on + strand, within CA264_09085at 2126.764 kb on + strand, within CA264_09085at 2126.774 kb on - strand, within CA264_09085at 2126.796 kb on - strand, within CA264_09085at 2126.867 kb on + strand, within CA264_09085at 2126.889 kb on + strand, within CA264_09085at 2126.899 kb on + strand, within CA264_09085at 2126.918 kb on + strand, within CA264_09085at 2126.930 kb on - strand, within CA264_09085at 2126.983 kb on + strand, within CA264_09085at 2126.983 kb on + strand, within CA264_09085at 2126.990 kb on - strand, within CA264_09085at 2126.990 kb on - strand, within CA264_09085at 2127.002 kb on + strand, within CA264_09085at 2127.003 kb on - strand, within CA264_09085at 2127.038 kb on - strand, within CA264_09085at 2127.052 kb on + strand, within CA264_09085at 2127.052 kb on + strand, within CA264_09085at 2127.053 kb on - strand, within CA264_09085at 2127.070 kb on + strand, within CA264_09085at 2127.070 kb on + strand, within CA264_09085at 2127.071 kb on - strand, within CA264_09085at 2127.073 kb on + strand, within CA264_09085at 2127.159 kb on - strand, within CA264_09085at 2127.185 kb on + strand, within CA264_09085at 2127.247 kb on + strand, within CA264_09085at 2127.353 kb on - strand, within CA264_09085at 2127.353 kb on - strand, within CA264_09085at 2127.443 kb on + strand, within CA264_09085at 2127.443 kb on + strand, within CA264_09085at 2127.443 kb on + strand, within CA264_09085at 2127.443 kb on + strand, within CA264_09085at 2127.448 kb on + strand, within CA264_09085at 2127.449 kb on - strand, within CA264_09085at 2127.449 kb on - strand, within CA264_09085at 2127.460 kb on + strand, within CA264_09085at 2127.460 kb on + strand, within CA264_09085at 2127.502 kb on - strand, within CA264_09085at 2127.502 kb on - strand, within CA264_09085at 2127.630 kb on + strand, within CA264_09085at 2127.742 kb on + strand, within CA264_09085at 2127.742 kb on + strand, within CA264_09085at 2127.775 kb on + strand, within CA264_09085at 2127.775 kb on + strand, within CA264_09085at 2127.811 kb on + strand, within CA264_09085at 2127.812 kb on - strand, within CA264_09085at 2127.812 kb on - strand, within CA264_09085at 2127.866 kb on + strand, within CA264_09085at 2127.867 kb on - strand, within CA264_09085at 2127.867 kb on - strand, within CA264_09085at 2127.867 kb on - strand, within CA264_09085at 2127.910 kb on + strand, within CA264_09085at 2127.911 kb on - strand, within CA264_09085at 2127.911 kb on - strand, within CA264_09085at 2127.917 kb on - strand, within CA264_09085at 2127.973 kb on + strand, within CA264_09085at 2127.973 kb on + strand, within CA264_09085at 2127.974 kb on - strand, within CA264_09085at 2128.039 kb on - strand, within CA264_09085at 2128.043 kb on + strand, within CA264_09085at 2128.043 kb on + strand, within CA264_09085at 2128.045 kb on + strand, within CA264_09085at 2128.046 kb on - strand, within CA264_09085at 2128.046 kb on - strand, within CA264_09085at 2128.048 kb on + strand, within CA264_09085at 2128.049 kb on - strand, within CA264_09085at 2128.134 kb on + strand, within CA264_09085at 2128.253 kb on - strandat 2128.256 kb on + strandat 2128.257 kb on - strandat 2128.257 kb on - strandat 2128.258 kb on + strandat 2128.259 kb on - strandat 2128.259 kb on - strandat 2128.271 kb on + strandat 2128.273 kb on + strandat 2128.273 kb on + strandat 2128.274 kb on - strandat 2128.292 kb on - strandat 2128.318 kb on - strandat 2128.358 kb on + strandat 2128.359 kb on - strandat 2128.396 kb on + strandat 2128.397 kb on - strandat 2128.494 kb on + strandat 2128.494 kb on + strandat 2128.494 kb on + strandat 2128.495 kb on - strandat 2128.597 kb on + strandat 2128.598 kb on - strandat 2128.605 kb on - strandat 2128.741 kb on - strandat 2128.746 kb on + strandat 2128.747 kb on - strandat 2128.747 kb on - strandat 2128.747 kb on - strandat 2128.826 kb on - strandat 2129.039 kb on + strand, within CA264_09090at 2129.040 kb on - strand, within CA264_09090at 2129.136 kb on - strand, within CA264_09090at 2129.291 kb on - strand, within CA264_09090at 2129.291 kb on - strand, within CA264_09090at 2129.309 kb on - strand, within CA264_09090at 2129.341 kb on + strand, within CA264_09090at 2129.405 kb on + strand, within CA264_09090at 2129.420 kb on + strand, within CA264_09090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,125,230 + CA264_09080 0.11 -1.3
2,125,501 - CA264_09080 0.37 +0.8
2,125,604 + CA264_09080 0.47 +0.5
2,125,605 - CA264_09080 0.47 -1.1
2,125,607 - CA264_09080 0.47 -0.3
2,125,734 - CA264_09080 0.59 -1.5
2,125,847 + CA264_09080 0.70 -0.2
2,125,887 - CA264_09080 0.74 +0.2
2,125,966 + CA264_09080 0.81 -3.2
2,125,967 - CA264_09080 0.81 -1.0
2,126,032 + CA264_09080 0.88 -0.3
2,126,032 + CA264_09080 0.88 -0.7
2,126,032 + CA264_09080 0.88 -0.7
2,126,032 + CA264_09080 0.88 +1.7
2,126,032 + CA264_09080 0.88 -0.8
2,126,033 - CA264_09080 0.88 -0.7
2,126,033 - CA264_09080 0.88 -1.2
2,126,033 - CA264_09080 0.88 -0.5
2,126,210 - -0.5
2,126,210 - -1.4
2,126,210 - +0.0
2,126,299 + -2.2
2,126,299 + -0.2
2,126,309 + -0.5
2,126,361 + -0.3
2,126,361 + -1.7
2,126,362 - -1.3
2,126,362 - +0.7
2,126,362 - +1.5
2,126,362 - +0.5
2,126,362 - -0.0
2,126,362 - -0.9
2,126,362 - -0.8
2,126,509 + CA264_09085 0.15 +0.8
2,126,510 - CA264_09085 0.15 +0.4
2,126,510 - CA264_09085 0.15 +0.0
2,126,520 + CA264_09085 0.15 -0.5
2,126,573 - CA264_09085 0.18 +1.5
2,126,579 - CA264_09085 0.18 +0.5
2,126,614 + CA264_09085 0.19 -0.1
2,126,615 - CA264_09085 0.19 -0.5
2,126,615 - CA264_09085 0.19 -1.2
2,126,662 + CA264_09085 0.21 -0.6
2,126,764 + CA264_09085 0.26 -2.1
2,126,774 - CA264_09085 0.26 -2.5
2,126,796 - CA264_09085 0.27 -0.4
2,126,867 + CA264_09085 0.30 +0.3
2,126,889 + CA264_09085 0.31 -0.2
2,126,899 + CA264_09085 0.32 -0.6
2,126,918 + CA264_09085 0.32 -1.3
2,126,930 - CA264_09085 0.33 +0.9
2,126,983 + CA264_09085 0.35 +0.0
2,126,983 + CA264_09085 0.35 +1.1
2,126,990 - CA264_09085 0.36 +0.8
2,126,990 - CA264_09085 0.36 -0.1
2,127,002 + CA264_09085 0.36 -1.0
2,127,003 - CA264_09085 0.36 +0.8
2,127,038 - CA264_09085 0.38 -1.7
2,127,052 + CA264_09085 0.38 +0.9
2,127,052 + CA264_09085 0.38 +1.0
2,127,053 - CA264_09085 0.38 -0.4
2,127,070 + CA264_09085 0.39 -1.8
2,127,070 + CA264_09085 0.39 +1.0
2,127,071 - CA264_09085 0.39 +1.2
2,127,073 + CA264_09085 0.39 -0.4
2,127,159 - CA264_09085 0.43 -1.0
2,127,185 + CA264_09085 0.44 -0.2
2,127,247 + CA264_09085 0.47 -0.3
2,127,353 - CA264_09085 0.51 +0.2
2,127,353 - CA264_09085 0.51 -0.6
2,127,443 + CA264_09085 0.55 +0.2
2,127,443 + CA264_09085 0.55 +0.8
2,127,443 + CA264_09085 0.55 +1.0
2,127,443 + CA264_09085 0.55 -0.4
2,127,448 + CA264_09085 0.55 -0.6
2,127,449 - CA264_09085 0.55 -0.5
2,127,449 - CA264_09085 0.55 -0.3
2,127,460 + CA264_09085 0.56 +0.0
2,127,460 + CA264_09085 0.56 -0.5
2,127,502 - CA264_09085 0.58 -1.0
2,127,502 - CA264_09085 0.58 -1.0
2,127,630 + CA264_09085 0.63 +1.0
2,127,742 + CA264_09085 0.68 -0.1
2,127,742 + CA264_09085 0.68 -1.1
2,127,775 + CA264_09085 0.69 +0.9
2,127,775 + CA264_09085 0.69 -0.7
2,127,811 + CA264_09085 0.71 -0.8
2,127,812 - CA264_09085 0.71 +0.0
2,127,812 - CA264_09085 0.71 -1.5
2,127,866 + CA264_09085 0.73 -1.1
2,127,867 - CA264_09085 0.73 -0.2
2,127,867 - CA264_09085 0.73 +0.0
2,127,867 - CA264_09085 0.73 +0.0
2,127,910 + CA264_09085 0.75 +0.1
2,127,911 - CA264_09085 0.75 -2.6
2,127,911 - CA264_09085 0.75 -0.5
2,127,917 - CA264_09085 0.76 +1.4
2,127,973 + CA264_09085 0.78 -1.8
2,127,973 + CA264_09085 0.78 -0.5
2,127,974 - CA264_09085 0.78 -1.0
2,128,039 - CA264_09085 0.81 +0.2
2,128,043 + CA264_09085 0.81 -0.8
2,128,043 + CA264_09085 0.81 -0.1
2,128,045 + CA264_09085 0.81 -0.7
2,128,046 - CA264_09085 0.81 -0.2
2,128,046 - CA264_09085 0.81 -0.4
2,128,048 + CA264_09085 0.81 -0.4
2,128,049 - CA264_09085 0.81 -0.4
2,128,134 + CA264_09085 0.85 -0.4
2,128,253 - +0.0
2,128,256 + -0.3
2,128,257 - +0.2
2,128,257 - -1.5
2,128,258 + -1.3
2,128,259 - -0.3
2,128,259 - -0.1
2,128,271 + -1.0
2,128,273 + -0.3
2,128,273 + -0.4
2,128,274 - -0.4
2,128,292 - +0.0
2,128,318 - -1.3
2,128,358 + +0.0
2,128,359 - +0.4
2,128,396 + -0.1
2,128,397 - -0.1
2,128,494 + -0.2
2,128,494 + +0.0
2,128,494 + -0.7
2,128,495 - -0.4
2,128,597 + -0.5
2,128,598 - +0.1
2,128,605 - +0.0
2,128,741 - +1.5
2,128,746 + +0.9
2,128,747 - -1.1
2,128,747 - -2.2
2,128,747 - -0.2
2,128,826 - +0.1
2,129,039 + CA264_09090 0.27 -1.0
2,129,040 - CA264_09090 0.27 -0.8
2,129,136 - CA264_09090 0.36 +0.0
2,129,291 - CA264_09090 0.51 +0.8
2,129,291 - CA264_09090 0.51 +0.5
2,129,309 - CA264_09090 0.52 +0.2
2,129,341 + CA264_09090 0.55 +0.8
2,129,405 + CA264_09090 0.61 -0.2
2,129,420 + CA264_09090 0.62 -1.0

Or see this region's nucleotide sequence