Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08975

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08970 and CA264_08975 are separated by 137 nucleotidesCA264_08975 and CA264_08980 are separated by 120 nucleotidesCA264_08980 and CA264_08985 are separated by 3 nucleotides CA264_08970: CA264_08970 - glycoside hydrolase family 15, at 2,094,520 to 2,096,244 _08970 CA264_08975: CA264_08975 - hypothetical protein, at 2,096,382 to 2,097,305 _08975 CA264_08980: CA264_08980 - hypothetical protein, at 2,097,426 to 2,097,794 _08980 CA264_08985: CA264_08985 - glycosyl transferase family 2, at 2,097,798 to 2,099,267 _08985 Position (kb) 2096 2097 2098Strain fitness (log2 ratio) -2 -1 0 1 2at 2095.502 kb on + strand, within CA264_08970at 2095.502 kb on + strand, within CA264_08970at 2095.554 kb on + strand, within CA264_08970at 2095.634 kb on + strand, within CA264_08970at 2095.710 kb on + strand, within CA264_08970at 2095.828 kb on + strand, within CA264_08970at 2095.829 kb on - strand, within CA264_08970at 2095.834 kb on + strand, within CA264_08970at 2095.898 kb on - strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2095.970 kb on + strand, within CA264_08970at 2096.151 kb on - strandat 2096.158 kb on + strandat 2096.178 kb on + strandat 2096.178 kb on + strandat 2096.181 kb on - strandat 2096.181 kb on - strandat 2096.250 kb on - strandat 2096.285 kb on - strandat 2096.287 kb on - strandat 2096.287 kb on - strandat 2096.325 kb on + strandat 2096.374 kb on + strandat 2096.383 kb on + strandat 2096.384 kb on - strandat 2096.394 kb on + strandat 2096.509 kb on - strand, within CA264_08975at 2096.583 kb on - strand, within CA264_08975at 2096.584 kb on + strand, within CA264_08975at 2096.850 kb on - strand, within CA264_08975at 2096.852 kb on - strand, within CA264_08975at 2096.937 kb on - strand, within CA264_08975at 2096.941 kb on + strand, within CA264_08975at 2096.941 kb on + strand, within CA264_08975at 2096.941 kb on + strand, within CA264_08975at 2096.951 kb on + strand, within CA264_08975at 2096.974 kb on + strand, within CA264_08975at 2096.974 kb on + strand, within CA264_08975at 2096.981 kb on - strand, within CA264_08975at 2097.096 kb on + strand, within CA264_08975at 2097.158 kb on - strand, within CA264_08975at 2097.158 kb on - strand, within CA264_08975at 2097.184 kb on + strand, within CA264_08975at 2097.191 kb on - strand, within CA264_08975at 2097.214 kb on - strandat 2097.364 kb on + strandat 2097.430 kb on - strandat 2097.489 kb on + strand, within CA264_08980at 2097.525 kb on + strand, within CA264_08980at 2097.526 kb on - strand, within CA264_08980at 2097.526 kb on - strand, within CA264_08980at 2097.637 kb on + strand, within CA264_08980at 2097.638 kb on - strand, within CA264_08980at 2097.673 kb on + strand, within CA264_08980at 2097.674 kb on - strand, within CA264_08980at 2097.700 kb on + strand, within CA264_08980at 2097.700 kb on + strand, within CA264_08980at 2097.781 kb on - strandat 2097.801 kb on + strandat 2097.801 kb on + strandat 2097.801 kb on - strandat 2097.820 kb on + strandat 2097.959 kb on - strand, within CA264_08985at 2098.192 kb on + strand, within CA264_08985

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,095,502 + CA264_08970 0.57 -2.1
2,095,502 + CA264_08970 0.57 +0.4
2,095,554 + CA264_08970 0.60 +0.0
2,095,634 + CA264_08970 0.65 +0.7
2,095,710 + CA264_08970 0.69 +1.9
2,095,828 + CA264_08970 0.76 -1.0
2,095,829 - CA264_08970 0.76 -1.8
2,095,834 + CA264_08970 0.76 -0.8
2,095,898 - CA264_08970 0.80 -1.2
2,095,970 + CA264_08970 0.84 -0.3
2,095,970 + CA264_08970 0.84 -2.0
2,095,970 + CA264_08970 0.84 +0.6
2,095,970 + CA264_08970 0.84 -1.1
2,095,970 + CA264_08970 0.84 +0.3
2,096,151 - -2.1
2,096,158 + -0.6
2,096,178 + -0.4
2,096,178 + -0.3
2,096,181 - -0.7
2,096,181 - -0.3
2,096,250 - -0.9
2,096,285 - -0.1
2,096,287 - -0.3
2,096,287 - -0.8
2,096,325 + +1.8
2,096,374 + -0.4
2,096,383 + +0.2
2,096,384 - -0.4
2,096,394 + -0.8
2,096,509 - CA264_08975 0.14 -0.1
2,096,583 - CA264_08975 0.22 -0.3
2,096,584 + CA264_08975 0.22 -2.4
2,096,850 - CA264_08975 0.51 +1.7
2,096,852 - CA264_08975 0.51 -0.7
2,096,937 - CA264_08975 0.60 +0.6
2,096,941 + CA264_08975 0.60 +0.6
2,096,941 + CA264_08975 0.60 +1.0
2,096,941 + CA264_08975 0.60 -0.4
2,096,951 + CA264_08975 0.62 -0.6
2,096,974 + CA264_08975 0.64 -0.3
2,096,974 + CA264_08975 0.64 -0.7
2,096,981 - CA264_08975 0.65 -0.6
2,097,096 + CA264_08975 0.77 -1.3
2,097,158 - CA264_08975 0.84 +0.2
2,097,158 - CA264_08975 0.84 +0.2
2,097,184 + CA264_08975 0.87 -0.7
2,097,191 - CA264_08975 0.88 -0.6
2,097,214 - +0.0
2,097,364 + -1.3
2,097,430 - -1.2
2,097,489 + CA264_08980 0.17 -1.5
2,097,525 + CA264_08980 0.27 -1.3
2,097,526 - CA264_08980 0.27 -0.5
2,097,526 - CA264_08980 0.27 -2.2
2,097,637 + CA264_08980 0.57 -1.0
2,097,638 - CA264_08980 0.57 -0.0
2,097,673 + CA264_08980 0.67 +1.8
2,097,674 - CA264_08980 0.67 +1.3
2,097,700 + CA264_08980 0.74 -1.4
2,097,700 + CA264_08980 0.74 -1.4
2,097,781 - -0.7
2,097,801 + -0.7
2,097,801 + +0.4
2,097,801 - -0.3
2,097,820 + -1.8
2,097,959 - CA264_08985 0.11 +0.6
2,098,192 + CA264_08985 0.27 -0.1

Or see this region's nucleotide sequence