Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08760

Experiment: m.b. Lomefloxacin 0.004 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_08755 and CA264_08760 are separated by 244 nucleotidesCA264_08760 and CA264_08765 are separated by 12 nucleotides CA264_08755: CA264_08755 - N-acetylmuramoyl-L-alanine amidase, at 2,042,680 to 2,043,291 _08755 CA264_08760: CA264_08760 - hypothetical protein, at 2,043,536 to 2,044,291 _08760 CA264_08765: CA264_08765 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 2,044,304 to 2,045,968 _08765 Position (kb) 2043 2044 2045Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2042.630 kb on - strandat 2042.645 kb on - strandat 2042.668 kb on - strandat 2042.681 kb on + strandat 2042.681 kb on + strandat 2042.682 kb on - strandat 2042.726 kb on + strandat 2042.776 kb on + strand, within CA264_08755at 2042.777 kb on - strand, within CA264_08755at 2042.923 kb on - strand, within CA264_08755at 2042.936 kb on + strand, within CA264_08755at 2042.936 kb on + strand, within CA264_08755at 2042.941 kb on + strand, within CA264_08755at 2042.941 kb on + strand, within CA264_08755at 2042.942 kb on - strand, within CA264_08755at 2042.981 kb on + strand, within CA264_08755at 2042.995 kb on + strand, within CA264_08755at 2042.995 kb on + strand, within CA264_08755at 2042.995 kb on + strand, within CA264_08755at 2042.995 kb on + strand, within CA264_08755at 2042.996 kb on - strand, within CA264_08755at 2042.996 kb on - strand, within CA264_08755at 2043.127 kb on - strand, within CA264_08755at 2043.157 kb on + strand, within CA264_08755at 2043.197 kb on + strand, within CA264_08755at 2043.198 kb on - strand, within CA264_08755at 2043.203 kb on - strand, within CA264_08755at 2043.204 kb on + strand, within CA264_08755at 2043.276 kb on + strandat 2043.298 kb on + strandat 2043.299 kb on - strandat 2043.299 kb on - strandat 2043.415 kb on + strandat 2043.551 kb on + strandat 2043.551 kb on + strandat 2043.644 kb on + strand, within CA264_08760at 2043.667 kb on + strand, within CA264_08760at 2043.682 kb on - strand, within CA264_08760at 2043.682 kb on - strand, within CA264_08760at 2043.682 kb on - strand, within CA264_08760at 2043.691 kb on + strand, within CA264_08760at 2043.692 kb on - strand, within CA264_08760at 2043.749 kb on + strand, within CA264_08760at 2043.853 kb on + strand, within CA264_08760at 2043.853 kb on + strand, within CA264_08760at 2043.854 kb on - strand, within CA264_08760at 2043.856 kb on - strand, within CA264_08760at 2043.860 kb on + strand, within CA264_08760at 2043.860 kb on + strand, within CA264_08760at 2043.861 kb on - strand, within CA264_08760at 2043.870 kb on - strand, within CA264_08760at 2043.882 kb on - strand, within CA264_08760at 2043.888 kb on + strand, within CA264_08760at 2043.888 kb on + strand, within CA264_08760at 2043.962 kb on - strand, within CA264_08760at 2044.033 kb on - strand, within CA264_08760at 2044.067 kb on + strand, within CA264_08760at 2044.067 kb on + strand, within CA264_08760at 2044.068 kb on - strand, within CA264_08760at 2044.068 kb on - strand, within CA264_08760at 2044.094 kb on - strand, within CA264_08760at 2044.096 kb on + strand, within CA264_08760at 2044.117 kb on + strand, within CA264_08760at 2044.131 kb on + strand, within CA264_08760at 2044.132 kb on - strand, within CA264_08760at 2044.132 kb on - strand, within CA264_08760at 2044.178 kb on - strand, within CA264_08760at 2044.179 kb on + strand, within CA264_08760at 2044.189 kb on + strand, within CA264_08760at 2044.189 kb on + strand, within CA264_08760at 2044.282 kb on + strandat 2044.295 kb on + strandat 2044.305 kb on + strandat 2044.305 kb on + strandat 2044.316 kb on - strandat 2044.329 kb on + strandat 2044.329 kb on + strandat 2044.330 kb on - strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.338 kb on + strandat 2044.447 kb on - strandat 2044.527 kb on + strand, within CA264_08765at 2044.527 kb on + strand, within CA264_08765at 2044.527 kb on + strand, within CA264_08765at 2044.528 kb on - strand, within CA264_08765at 2044.534 kb on - strand, within CA264_08765at 2044.587 kb on + strand, within CA264_08765at 2044.588 kb on - strand, within CA264_08765at 2044.588 kb on - strand, within CA264_08765at 2044.615 kb on + strand, within CA264_08765at 2044.659 kb on + strand, within CA264_08765at 2044.688 kb on + strand, within CA264_08765at 2044.767 kb on + strand, within CA264_08765at 2044.768 kb on - strand, within CA264_08765at 2044.799 kb on + strand, within CA264_08765at 2044.803 kb on + strand, within CA264_08765at 2044.804 kb on - strand, within CA264_08765at 2044.819 kb on + strand, within CA264_08765at 2044.840 kb on - strand, within CA264_08765at 2044.847 kb on - strand, within CA264_08765at 2044.878 kb on + strand, within CA264_08765at 2044.882 kb on + strand, within CA264_08765at 2044.882 kb on + strand, within CA264_08765at 2044.883 kb on - strand, within CA264_08765at 2044.883 kb on - strand, within CA264_08765at 2044.892 kb on - strand, within CA264_08765at 2044.907 kb on - strand, within CA264_08765at 2044.907 kb on - strand, within CA264_08765at 2044.919 kb on - strand, within CA264_08765at 2044.919 kb on - strand, within CA264_08765at 2044.947 kb on - strand, within CA264_08765at 2044.982 kb on + strand, within CA264_08765at 2044.992 kb on + strand, within CA264_08765at 2045.084 kb on - strand, within CA264_08765at 2045.093 kb on + strand, within CA264_08765at 2045.253 kb on - strand, within CA264_08765at 2045.256 kb on + strand, within CA264_08765at 2045.264 kb on + strand, within CA264_08765at 2045.265 kb on - strand, within CA264_08765

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
remove
2,042,630 - +2.4
2,042,645 - +0.1
2,042,668 - -1.0
2,042,681 + +1.7
2,042,681 + -0.5
2,042,682 - +0.1
2,042,726 + +0.7
2,042,776 + CA264_08755 0.16 -0.4
2,042,777 - CA264_08755 0.16 +0.5
2,042,923 - CA264_08755 0.40 -0.4
2,042,936 + CA264_08755 0.42 -0.1
2,042,936 + CA264_08755 0.42 -2.4
2,042,941 + CA264_08755 0.43 +0.1
2,042,941 + CA264_08755 0.43 -1.3
2,042,942 - CA264_08755 0.43 +0.5
2,042,981 + CA264_08755 0.49 +0.3
2,042,995 + CA264_08755 0.51 -0.8
2,042,995 + CA264_08755 0.51 -0.5
2,042,995 + CA264_08755 0.51 -0.6
2,042,995 + CA264_08755 0.51 -0.6
2,042,996 - CA264_08755 0.52 -0.8
2,042,996 - CA264_08755 0.52 +0.4
2,043,127 - CA264_08755 0.73 -0.3
2,043,157 + CA264_08755 0.78 -0.9
2,043,197 + CA264_08755 0.84 -0.6
2,043,198 - CA264_08755 0.85 +1.8
2,043,203 - CA264_08755 0.85 +1.4
2,043,204 + CA264_08755 0.86 -1.2
2,043,276 + +1.0
2,043,298 + -1.0
2,043,299 - -2.6
2,043,299 - -2.9
2,043,415 + -0.7
2,043,551 + +0.6
2,043,551 + +0.5
2,043,644 + CA264_08760 0.14 -0.1
2,043,667 + CA264_08760 0.17 +0.2
2,043,682 - CA264_08760 0.19 -0.4
2,043,682 - CA264_08760 0.19 -0.1
2,043,682 - CA264_08760 0.19 -0.0
2,043,691 + CA264_08760 0.21 -0.7
2,043,692 - CA264_08760 0.21 -0.6
2,043,749 + CA264_08760 0.28 +0.0
2,043,853 + CA264_08760 0.42 -0.2
2,043,853 + CA264_08760 0.42 +0.7
2,043,854 - CA264_08760 0.42 +0.7
2,043,856 - CA264_08760 0.42 -0.9
2,043,860 + CA264_08760 0.43 +0.6
2,043,860 + CA264_08760 0.43 -0.1
2,043,861 - CA264_08760 0.43 -1.7
2,043,870 - CA264_08760 0.44 +0.6
2,043,882 - CA264_08760 0.46 -0.9
2,043,888 + CA264_08760 0.47 -0.1
2,043,888 + CA264_08760 0.47 +0.6
2,043,962 - CA264_08760 0.56 +0.8
2,044,033 - CA264_08760 0.66 +1.4
2,044,067 + CA264_08760 0.70 -1.4
2,044,067 + CA264_08760 0.70 +0.6
2,044,068 - CA264_08760 0.70 +1.4
2,044,068 - CA264_08760 0.70 +0.0
2,044,094 - CA264_08760 0.74 -1.4
2,044,096 + CA264_08760 0.74 +0.7
2,044,117 + CA264_08760 0.77 +0.6
2,044,131 + CA264_08760 0.79 -0.2
2,044,132 - CA264_08760 0.79 +2.6
2,044,132 - CA264_08760 0.79 +0.3
2,044,178 - CA264_08760 0.85 -0.3
2,044,179 + CA264_08760 0.85 -1.1
2,044,189 + CA264_08760 0.86 -0.8
2,044,189 + CA264_08760 0.86 -0.2
2,044,282 + +0.8
2,044,295 + -1.4
2,044,305 + +0.5
2,044,305 + -0.9
2,044,316 - -0.7
2,044,329 + +0.6
2,044,329 + -0.4
2,044,330 - +1.1
2,044,333 + -0.1
2,044,333 + -0.9
2,044,333 + +0.6
2,044,333 + -0.6
2,044,333 + +0.9
2,044,334 - -0.9
2,044,334 - -0.5
2,044,334 - -0.9
2,044,334 - +0.9
2,044,334 - -1.0
2,044,334 - +0.2
2,044,338 + -0.1
2,044,447 - +1.1
2,044,527 + CA264_08765 0.13 -1.4
2,044,527 + CA264_08765 0.13 +1.2
2,044,527 + CA264_08765 0.13 +0.1
2,044,528 - CA264_08765 0.13 -1.1
2,044,534 - CA264_08765 0.14 +0.8
2,044,587 + CA264_08765 0.17 +0.4
2,044,588 - CA264_08765 0.17 -0.1
2,044,588 - CA264_08765 0.17 +0.2
2,044,615 + CA264_08765 0.19 +0.8
2,044,659 + CA264_08765 0.21 -0.3
2,044,688 + CA264_08765 0.23 +0.8
2,044,767 + CA264_08765 0.28 -1.4
2,044,768 - CA264_08765 0.28 -0.3
2,044,799 + CA264_08765 0.30 -0.8
2,044,803 + CA264_08765 0.30 +1.4
2,044,804 - CA264_08765 0.30 -0.9
2,044,819 + CA264_08765 0.31 -1.3
2,044,840 - CA264_08765 0.32 -1.0
2,044,847 - CA264_08765 0.33 -0.6
2,044,878 + CA264_08765 0.34 -0.3
2,044,882 + CA264_08765 0.35 -0.3
2,044,882 + CA264_08765 0.35 +0.1
2,044,883 - CA264_08765 0.35 +0.6
2,044,883 - CA264_08765 0.35 -0.3
2,044,892 - CA264_08765 0.35 -0.6
2,044,907 - CA264_08765 0.36 +2.3
2,044,907 - CA264_08765 0.36 -0.6
2,044,919 - CA264_08765 0.37 -0.4
2,044,919 - CA264_08765 0.37 -0.3
2,044,947 - CA264_08765 0.39 -0.3
2,044,982 + CA264_08765 0.41 -0.1
2,044,992 + CA264_08765 0.41 +1.2
2,045,084 - CA264_08765 0.47 +0.8
2,045,093 + CA264_08765 0.47 -2.0
2,045,253 - CA264_08765 0.57 -0.8
2,045,256 + CA264_08765 0.57 -0.3
2,045,264 + CA264_08765 0.58 -1.3
2,045,265 - CA264_08765 0.58 -1.2

Or see this region's nucleotide sequence