Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08630 and CA264_08635 overlap by 26 nucleotides CA264_08635 and CA264_08640 overlap by 17 nucleotides CA264_08640 and CA264_08645 overlap by 4 nucleotides
CA264_08630: CA264_08630 - hypothetical protein, at 2,002,342 to 2,003,304
_08630
CA264_08635: CA264_08635 - hypothetical protein, at 2,003,279 to 2,004,175
_08635
CA264_08640: CA264_08640 - hypothetical protein, at 2,004,159 to 2,004,896
_08640
CA264_08645: CA264_08645 - hypothetical protein, at 2,004,893 to 2,006,077
_08645
Position (kb)
2004
2005 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2003.211 kb on + strand at 2003.212 kb on - strand at 2003.212 kb on - strand at 2003.213 kb on + strand at 2003.213 kb on + strand at 2003.214 kb on - strand at 2003.233 kb on - strand at 2003.242 kb on + strand at 2003.242 kb on + strand at 2003.247 kb on + strand at 2003.247 kb on + strand at 2003.249 kb on - strand at 2003.308 kb on - strand at 2003.400 kb on - strand, within CA264_08635 at 2003.444 kb on + strand, within CA264_08635 at 2003.543 kb on + strand, within CA264_08635 at 2003.544 kb on - strand, within CA264_08635 at 2003.600 kb on + strand, within CA264_08635 at 2003.607 kb on - strand, within CA264_08635 at 2003.619 kb on - strand, within CA264_08635 at 2003.669 kb on - strand, within CA264_08635 at 2003.669 kb on - strand, within CA264_08635 at 2003.693 kb on + strand, within CA264_08635 at 2003.703 kb on + strand, within CA264_08635 at 2003.841 kb on - strand, within CA264_08635 at 2003.841 kb on - strand, within CA264_08635 at 2003.847 kb on + strand, within CA264_08635 at 2003.848 kb on - strand, within CA264_08635 at 2003.879 kb on - strand, within CA264_08635 at 2003.879 kb on - strand, within CA264_08635 at 2003.897 kb on - strand, within CA264_08635 at 2003.991 kb on + strand, within CA264_08635 at 2003.992 kb on - strand, within CA264_08635 at 2003.992 kb on - strand, within CA264_08635 at 2004.039 kb on - strand, within CA264_08635 at 2004.170 kb on + strand at 2004.170 kb on + strand at 2004.170 kb on + strand at 2004.171 kb on - strand at 2004.171 kb on - strand at 2004.174 kb on - strand at 2004.200 kb on - strand at 2004.339 kb on + strand, within CA264_08640 at 2004.459 kb on + strand, within CA264_08640 at 2004.485 kb on - strand, within CA264_08640 at 2004.548 kb on + strand, within CA264_08640 at 2004.548 kb on + strand, within CA264_08640 at 2004.549 kb on - strand, within CA264_08640 at 2004.549 kb on - strand, within CA264_08640 at 2004.637 kb on - strand, within CA264_08640 at 2004.661 kb on - strand, within CA264_08640 at 2004.733 kb on - strand, within CA264_08640 at 2004.737 kb on - strand, within CA264_08640 at 2004.911 kb on + strand at 2004.912 kb on - strand at 2004.913 kb on + strand at 2004.914 kb on - strand at 2005.037 kb on + strand, within CA264_08645 at 2005.097 kb on + strand, within CA264_08645 at 2005.098 kb on - strand, within CA264_08645 at 2005.133 kb on + strand, within CA264_08645 at 2005.134 kb on - strand, within CA264_08645 at 2005.237 kb on + strand, within CA264_08645 at 2005.341 kb on - strand, within CA264_08645 at 2005.342 kb on + strand, within CA264_08645 at 2005.343 kb on - strand, within CA264_08645 at 2005.400 kb on - strand, within CA264_08645 at 2005.400 kb on - strand, within CA264_08645 at 2005.553 kb on + strand, within CA264_08645 at 2005.586 kb on + strand, within CA264_08645 at 2005.633 kb on - strand, within CA264_08645 at 2005.661 kb on + strand, within CA264_08645 at 2005.664 kb on + strand, within CA264_08645 at 2005.664 kb on + strand, within CA264_08645 at 2005.664 kb on + strand, within CA264_08645 at 2005.665 kb on - strand, within CA264_08645 at 2005.838 kb on + strand, within CA264_08645 at 2005.839 kb on - strand, within CA264_08645 at 2005.865 kb on + strand, within CA264_08645
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 2,003,211 + +0.2 2,003,212 - -1.8 2,003,212 - +0.4 2,003,213 + -1.0 2,003,213 + -0.4 2,003,214 - +1.0 2,003,233 - -0.3 2,003,242 + -1.2 2,003,242 + -0.6 2,003,247 + -0.8 2,003,247 + -0.8 2,003,249 - -1.2 2,003,308 - -3.4 2,003,400 - CA264_08635 0.13 -1.0 2,003,444 + CA264_08635 0.18 +0.1 2,003,543 + CA264_08635 0.29 -0.1 2,003,544 - CA264_08635 0.30 -0.3 2,003,600 + CA264_08635 0.36 +0.6 2,003,607 - CA264_08635 0.37 -0.9 2,003,619 - CA264_08635 0.38 -2.3 2,003,669 - CA264_08635 0.43 +1.5 2,003,669 - CA264_08635 0.43 +0.0 2,003,693 + CA264_08635 0.46 +0.1 2,003,703 + CA264_08635 0.47 -1.7 2,003,841 - CA264_08635 0.63 +2.4 2,003,841 - CA264_08635 0.63 +0.0 2,003,847 + CA264_08635 0.63 +0.1 2,003,848 - CA264_08635 0.63 -0.2 2,003,879 - CA264_08635 0.67 +0.3 2,003,879 - CA264_08635 0.67 +0.1 2,003,897 - CA264_08635 0.69 +1.1 2,003,991 + CA264_08635 0.79 +0.2 2,003,992 - CA264_08635 0.79 -0.3 2,003,992 - CA264_08635 0.79 +0.2 2,004,039 - CA264_08635 0.85 +0.2 2,004,170 + +0.0 2,004,170 + +0.5 2,004,170 + +0.3 2,004,171 - +0.5 2,004,171 - +2.4 2,004,174 - -0.4 2,004,200 - -0.1 2,004,339 + CA264_08640 0.24 +0.1 2,004,459 + CA264_08640 0.41 -0.1 2,004,485 - CA264_08640 0.44 +1.5 2,004,548 + CA264_08640 0.53 -0.4 2,004,548 + CA264_08640 0.53 +1.4 2,004,549 - CA264_08640 0.53 -0.2 2,004,549 - CA264_08640 0.53 +1.7 2,004,637 - CA264_08640 0.65 +0.5 2,004,661 - CA264_08640 0.68 -2.2 2,004,733 - CA264_08640 0.78 +1.2 2,004,737 - CA264_08640 0.78 -0.1 2,004,911 + -0.4 2,004,912 - -1.3 2,004,913 + -0.5 2,004,914 - -0.1 2,005,037 + CA264_08645 0.12 -0.6 2,005,097 + CA264_08645 0.17 -1.1 2,005,098 - CA264_08645 0.17 +2.0 2,005,133 + CA264_08645 0.20 -2.2 2,005,134 - CA264_08645 0.20 +0.6 2,005,237 + CA264_08645 0.29 +0.6 2,005,341 - CA264_08645 0.38 -0.7 2,005,342 + CA264_08645 0.38 -1.0 2,005,343 - CA264_08645 0.38 -0.3 2,005,400 - CA264_08645 0.43 -0.8 2,005,400 - CA264_08645 0.43 -1.0 2,005,553 + CA264_08645 0.56 -0.6 2,005,586 + CA264_08645 0.58 +0.8 2,005,633 - CA264_08645 0.62 +0.0 2,005,661 + CA264_08645 0.65 -0.5 2,005,664 + CA264_08645 0.65 -1.6 2,005,664 + CA264_08645 0.65 -0.4 2,005,664 + CA264_08645 0.65 -0.4 2,005,665 - CA264_08645 0.65 +0.6 2,005,838 + CA264_08645 0.80 +0.1 2,005,839 - CA264_08645 0.80 -0.2 2,005,865 + CA264_08645 0.82 -0.7
Or see this region's nucleotide sequence