Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08640

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08630 and CA264_08635 overlap by 26 nucleotidesCA264_08635 and CA264_08640 overlap by 17 nucleotidesCA264_08640 and CA264_08645 overlap by 4 nucleotides CA264_08630: CA264_08630 - hypothetical protein, at 2,002,342 to 2,003,304 _08630 CA264_08635: CA264_08635 - hypothetical protein, at 2,003,279 to 2,004,175 _08635 CA264_08640: CA264_08640 - hypothetical protein, at 2,004,159 to 2,004,896 _08640 CA264_08645: CA264_08645 - hypothetical protein, at 2,004,893 to 2,006,077 _08645 Position (kb) 2004 2005Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2003.211 kb on + strandat 2003.212 kb on - strandat 2003.212 kb on - strandat 2003.213 kb on + strandat 2003.213 kb on + strandat 2003.214 kb on - strandat 2003.233 kb on - strandat 2003.242 kb on + strandat 2003.242 kb on + strandat 2003.247 kb on + strandat 2003.247 kb on + strandat 2003.249 kb on - strandat 2003.308 kb on - strandat 2003.400 kb on - strand, within CA264_08635at 2003.444 kb on + strand, within CA264_08635at 2003.543 kb on + strand, within CA264_08635at 2003.544 kb on - strand, within CA264_08635at 2003.600 kb on + strand, within CA264_08635at 2003.607 kb on - strand, within CA264_08635at 2003.619 kb on - strand, within CA264_08635at 2003.669 kb on - strand, within CA264_08635at 2003.669 kb on - strand, within CA264_08635at 2003.693 kb on + strand, within CA264_08635at 2003.703 kb on + strand, within CA264_08635at 2003.841 kb on - strand, within CA264_08635at 2003.841 kb on - strand, within CA264_08635at 2003.847 kb on + strand, within CA264_08635at 2003.848 kb on - strand, within CA264_08635at 2003.879 kb on - strand, within CA264_08635at 2003.879 kb on - strand, within CA264_08635at 2003.897 kb on - strand, within CA264_08635at 2003.991 kb on + strand, within CA264_08635at 2003.992 kb on - strand, within CA264_08635at 2003.992 kb on - strand, within CA264_08635at 2004.039 kb on - strand, within CA264_08635at 2004.170 kb on + strandat 2004.170 kb on + strandat 2004.170 kb on + strandat 2004.171 kb on - strandat 2004.171 kb on - strandat 2004.174 kb on - strandat 2004.200 kb on - strandat 2004.339 kb on + strand, within CA264_08640at 2004.459 kb on + strand, within CA264_08640at 2004.485 kb on - strand, within CA264_08640at 2004.548 kb on + strand, within CA264_08640at 2004.548 kb on + strand, within CA264_08640at 2004.549 kb on - strand, within CA264_08640at 2004.549 kb on - strand, within CA264_08640at 2004.637 kb on - strand, within CA264_08640at 2004.661 kb on - strand, within CA264_08640at 2004.733 kb on - strand, within CA264_08640at 2004.737 kb on - strand, within CA264_08640at 2004.911 kb on + strandat 2004.912 kb on - strandat 2004.913 kb on + strandat 2004.914 kb on - strandat 2005.037 kb on + strand, within CA264_08645at 2005.097 kb on + strand, within CA264_08645at 2005.098 kb on - strand, within CA264_08645at 2005.133 kb on + strand, within CA264_08645at 2005.134 kb on - strand, within CA264_08645at 2005.237 kb on + strand, within CA264_08645at 2005.341 kb on - strand, within CA264_08645at 2005.342 kb on + strand, within CA264_08645at 2005.343 kb on - strand, within CA264_08645at 2005.400 kb on - strand, within CA264_08645at 2005.400 kb on - strand, within CA264_08645at 2005.553 kb on + strand, within CA264_08645at 2005.586 kb on + strand, within CA264_08645at 2005.633 kb on - strand, within CA264_08645at 2005.661 kb on + strand, within CA264_08645at 2005.664 kb on + strand, within CA264_08645at 2005.664 kb on + strand, within CA264_08645at 2005.664 kb on + strand, within CA264_08645at 2005.665 kb on - strand, within CA264_08645at 2005.838 kb on + strand, within CA264_08645at 2005.839 kb on - strand, within CA264_08645at 2005.865 kb on + strand, within CA264_08645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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2,003,211 + +0.2
2,003,212 - -1.8
2,003,212 - +0.4
2,003,213 + -1.0
2,003,213 + -0.4
2,003,214 - +1.0
2,003,233 - -0.3
2,003,242 + -1.2
2,003,242 + -0.6
2,003,247 + -0.8
2,003,247 + -0.8
2,003,249 - -1.2
2,003,308 - -3.4
2,003,400 - CA264_08635 0.13 -1.0
2,003,444 + CA264_08635 0.18 +0.1
2,003,543 + CA264_08635 0.29 -0.1
2,003,544 - CA264_08635 0.30 -0.3
2,003,600 + CA264_08635 0.36 +0.6
2,003,607 - CA264_08635 0.37 -0.9
2,003,619 - CA264_08635 0.38 -2.3
2,003,669 - CA264_08635 0.43 +1.5
2,003,669 - CA264_08635 0.43 +0.0
2,003,693 + CA264_08635 0.46 +0.1
2,003,703 + CA264_08635 0.47 -1.7
2,003,841 - CA264_08635 0.63 +2.4
2,003,841 - CA264_08635 0.63 +0.0
2,003,847 + CA264_08635 0.63 +0.1
2,003,848 - CA264_08635 0.63 -0.2
2,003,879 - CA264_08635 0.67 +0.3
2,003,879 - CA264_08635 0.67 +0.1
2,003,897 - CA264_08635 0.69 +1.1
2,003,991 + CA264_08635 0.79 +0.2
2,003,992 - CA264_08635 0.79 -0.3
2,003,992 - CA264_08635 0.79 +0.2
2,004,039 - CA264_08635 0.85 +0.2
2,004,170 + +0.0
2,004,170 + +0.5
2,004,170 + +0.3
2,004,171 - +0.5
2,004,171 - +2.4
2,004,174 - -0.4
2,004,200 - -0.1
2,004,339 + CA264_08640 0.24 +0.1
2,004,459 + CA264_08640 0.41 -0.1
2,004,485 - CA264_08640 0.44 +1.5
2,004,548 + CA264_08640 0.53 -0.4
2,004,548 + CA264_08640 0.53 +1.4
2,004,549 - CA264_08640 0.53 -0.2
2,004,549 - CA264_08640 0.53 +1.7
2,004,637 - CA264_08640 0.65 +0.5
2,004,661 - CA264_08640 0.68 -2.2
2,004,733 - CA264_08640 0.78 +1.2
2,004,737 - CA264_08640 0.78 -0.1
2,004,911 + -0.4
2,004,912 - -1.3
2,004,913 + -0.5
2,004,914 - -0.1
2,005,037 + CA264_08645 0.12 -0.6
2,005,097 + CA264_08645 0.17 -1.1
2,005,098 - CA264_08645 0.17 +2.0
2,005,133 + CA264_08645 0.20 -2.2
2,005,134 - CA264_08645 0.20 +0.6
2,005,237 + CA264_08645 0.29 +0.6
2,005,341 - CA264_08645 0.38 -0.7
2,005,342 + CA264_08645 0.38 -1.0
2,005,343 - CA264_08645 0.38 -0.3
2,005,400 - CA264_08645 0.43 -0.8
2,005,400 - CA264_08645 0.43 -1.0
2,005,553 + CA264_08645 0.56 -0.6
2,005,586 + CA264_08645 0.58 +0.8
2,005,633 - CA264_08645 0.62 +0.0
2,005,661 + CA264_08645 0.65 -0.5
2,005,664 + CA264_08645 0.65 -1.6
2,005,664 + CA264_08645 0.65 -0.4
2,005,664 + CA264_08645 0.65 -0.4
2,005,665 - CA264_08645 0.65 +0.6
2,005,838 + CA264_08645 0.80 +0.1
2,005,839 - CA264_08645 0.80 -0.2
2,005,865 + CA264_08645 0.82 -0.7

Or see this region's nucleotide sequence