Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08415 and CA264_08420 are separated by 76 nucleotides CA264_08420 and CA264_08425 are separated by 141 nucleotides
CA264_08415: CA264_08415 - hypothetical protein, at 1,949,616 to 1,950,479
_08415
CA264_08420: CA264_08420 - AraC family transcriptional regulator, at 1,950,556 to 1,951,374
_08420
CA264_08425: CA264_08425 - T9SS C-terminal target domain-containing protein, at 1,951,516 to 1,953,081
_08425
Position (kb)
1950
1951
1952 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1949.617 kb on + strand at 1949.617 kb on + strand at 1949.629 kb on - strand at 1949.874 kb on + strand, within CA264_08415 at 1949.894 kb on - strand, within CA264_08415 at 1949.907 kb on + strand, within CA264_08415 at 1949.931 kb on + strand, within CA264_08415 at 1949.983 kb on + strand, within CA264_08415 at 1949.985 kb on + strand, within CA264_08415 at 1950.047 kb on + strand, within CA264_08415 at 1950.223 kb on - strand, within CA264_08415 at 1950.460 kb on + strand at 1950.460 kb on + strand at 1950.482 kb on + strand at 1950.482 kb on + strand at 1950.482 kb on + strand at 1950.483 kb on - strand at 1950.483 kb on - strand at 1950.483 kb on - strand at 1950.486 kb on + strand at 1950.595 kb on + strand at 1950.606 kb on - strand at 1950.609 kb on + strand at 1950.609 kb on + strand at 1950.610 kb on - strand at 1950.620 kb on + strand at 1950.647 kb on - strand, within CA264_08420 at 1950.647 kb on - strand, within CA264_08420 at 1950.651 kb on - strand, within CA264_08420 at 1950.677 kb on + strand, within CA264_08420 at 1950.677 kb on + strand, within CA264_08420 at 1950.678 kb on - strand, within CA264_08420 at 1950.680 kb on + strand, within CA264_08420 at 1950.752 kb on - strand, within CA264_08420 at 1950.906 kb on + strand, within CA264_08420 at 1950.907 kb on - strand, within CA264_08420 at 1950.907 kb on - strand, within CA264_08420 at 1950.932 kb on + strand, within CA264_08420 at 1950.932 kb on + strand, within CA264_08420 at 1951.115 kb on - strand, within CA264_08420 at 1951.136 kb on - strand, within CA264_08420 at 1951.220 kb on + strand, within CA264_08420 at 1951.230 kb on + strand, within CA264_08420 at 1951.231 kb on - strand, within CA264_08420 at 1951.237 kb on - strand, within CA264_08420 at 1951.331 kb on + strand at 1951.339 kb on + strand at 1951.340 kb on - strand at 1951.342 kb on + strand at 1951.380 kb on - strand at 1951.405 kb on - strand at 1951.445 kb on - strand at 1951.583 kb on + strand at 1951.583 kb on + strand at 1951.607 kb on - strand at 1951.608 kb on + strand at 1951.631 kb on - strand at 1951.719 kb on + strand, within CA264_08425 at 1951.754 kb on + strand, within CA264_08425 at 1951.755 kb on - strand, within CA264_08425 at 1951.821 kb on - strand, within CA264_08425 at 1951.828 kb on + strand, within CA264_08425 at 1951.967 kb on + strand, within CA264_08425 at 1952.021 kb on + strand, within CA264_08425 at 1952.024 kb on + strand, within CA264_08425 at 1952.055 kb on + strand, within CA264_08425 at 1952.055 kb on + strand, within CA264_08425 at 1952.107 kb on + strand, within CA264_08425 at 1952.150 kb on - strand, within CA264_08425 at 1952.151 kb on - strand, within CA264_08425 at 1952.151 kb on - strand, within CA264_08425 at 1952.183 kb on + strand, within CA264_08425 at 1952.183 kb on + strand, within CA264_08425 at 1952.369 kb on - strand, within CA264_08425 at 1952.369 kb on - strand, within CA264_08425
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 1,949,617 + -1.5 1,949,617 + +0.0 1,949,629 - -1.1 1,949,874 + CA264_08415 0.30 -0.1 1,949,894 - CA264_08415 0.32 -2.1 1,949,907 + CA264_08415 0.34 -0.0 1,949,931 + CA264_08415 0.36 -0.2 1,949,983 + CA264_08415 0.42 -0.1 1,949,985 + CA264_08415 0.43 +0.2 1,950,047 + CA264_08415 0.50 +0.3 1,950,223 - CA264_08415 0.70 +0.5 1,950,460 + -0.2 1,950,460 + -0.9 1,950,482 + -0.4 1,950,482 + -0.2 1,950,482 + -0.2 1,950,483 - +0.6 1,950,483 - -0.8 1,950,483 - -0.8 1,950,486 + -0.4 1,950,595 + +2.1 1,950,606 - +1.0 1,950,609 + -0.5 1,950,609 + +0.5 1,950,610 - -1.5 1,950,620 + +0.1 1,950,647 - CA264_08420 0.11 -0.7 1,950,647 - CA264_08420 0.11 +0.2 1,950,651 - CA264_08420 0.12 +0.1 1,950,677 + CA264_08420 0.15 +2.5 1,950,677 + CA264_08420 0.15 -0.8 1,950,678 - CA264_08420 0.15 -0.0 1,950,680 + CA264_08420 0.15 +1.1 1,950,752 - CA264_08420 0.24 +1.1 1,950,906 + CA264_08420 0.43 -0.5 1,950,907 - CA264_08420 0.43 +0.5 1,950,907 - CA264_08420 0.43 -0.1 1,950,932 + CA264_08420 0.46 -0.3 1,950,932 + CA264_08420 0.46 +0.0 1,951,115 - CA264_08420 0.68 +0.3 1,951,136 - CA264_08420 0.71 -1.1 1,951,220 + CA264_08420 0.81 -0.9 1,951,230 + CA264_08420 0.82 -0.4 1,951,231 - CA264_08420 0.82 -0.7 1,951,237 - CA264_08420 0.83 +1.1 1,951,331 + +0.5 1,951,339 + -0.2 1,951,340 - -1.5 1,951,342 + -1.0 1,951,380 - -1.0 1,951,405 - -2.4 1,951,445 - -1.2 1,951,583 + -1.6 1,951,583 + -1.1 1,951,607 - -0.5 1,951,608 + -1.1 1,951,631 - +0.2 1,951,719 + CA264_08425 0.13 +0.4 1,951,754 + CA264_08425 0.15 -1.3 1,951,755 - CA264_08425 0.15 -0.9 1,951,821 - CA264_08425 0.19 -0.2 1,951,828 + CA264_08425 0.20 +0.1 1,951,967 + CA264_08425 0.29 +1.6 1,952,021 + CA264_08425 0.32 +0.2 1,952,024 + CA264_08425 0.32 -2.3 1,952,055 + CA264_08425 0.34 +0.9 1,952,055 + CA264_08425 0.34 -1.1 1,952,107 + CA264_08425 0.38 -0.6 1,952,150 - CA264_08425 0.40 +0.1 1,952,151 - CA264_08425 0.41 -1.2 1,952,151 - CA264_08425 0.41 +0.1 1,952,183 + CA264_08425 0.43 -0.7 1,952,183 + CA264_08425 0.43 -0.3 1,952,369 - CA264_08425 0.54 -0.6 1,952,369 - CA264_08425 0.54 -0.5
Or see this region's nucleotide sequence