Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_06750 and CA264_06755 are separated by 1 nucleotides CA264_06755 and CA264_06760 are separated by 92 nucleotides CA264_06760 and CA264_06765 are separated by 129 nucleotides
CA264_06750: CA264_06750 - hypothetical protein, at 1,561,813 to 1,562,616
_06750
CA264_06755: CA264_06755 - hypothetical protein, at 1,562,618 to 1,563,073
_06755
CA264_06760: CA264_06760 - hypothetical protein, at 1,563,166 to 1,564,320
_06760
CA264_06765: CA264_06765 - hypothetical protein, at 1,564,450 to 1,565,742
_06765
Position (kb)
1563
1564
1565 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1562.185 kb on + strand, within CA264_06750 at 1562.196 kb on + strand, within CA264_06750 at 1562.197 kb on - strand, within CA264_06750 at 1562.238 kb on - strand, within CA264_06750 at 1562.279 kb on - strand, within CA264_06750 at 1562.437 kb on + strand, within CA264_06750 at 1562.437 kb on + strand, within CA264_06750 at 1562.438 kb on - strand, within CA264_06750 at 1562.455 kb on + strand, within CA264_06750 at 1562.480 kb on - strand, within CA264_06750 at 1562.529 kb on + strand, within CA264_06750 at 1562.530 kb on - strand, within CA264_06750 at 1562.547 kb on + strand at 1562.547 kb on + strand at 1562.594 kb on + strand at 1562.594 kb on + strand at 1562.679 kb on - strand, within CA264_06755 at 1562.780 kb on + strand, within CA264_06755 at 1562.781 kb on - strand, within CA264_06755 at 1562.834 kb on + strand, within CA264_06755 at 1562.835 kb on - strand, within CA264_06755 at 1562.876 kb on - strand, within CA264_06755 at 1562.880 kb on - strand, within CA264_06755 at 1562.891 kb on - strand, within CA264_06755 at 1562.945 kb on + strand, within CA264_06755 at 1562.946 kb on - strand, within CA264_06755 at 1562.957 kb on + strand, within CA264_06755 at 1562.975 kb on - strand, within CA264_06755 at 1562.980 kb on + strand, within CA264_06755 at 1562.981 kb on - strand, within CA264_06755 at 1562.981 kb on - strand, within CA264_06755 at 1562.981 kb on - strand, within CA264_06755 at 1563.056 kb on + strand at 1563.092 kb on - strand at 1563.093 kb on + strand at 1563.250 kb on + strand at 1563.250 kb on + strand at 1563.503 kb on + strand, within CA264_06760 at 1563.564 kb on + strand, within CA264_06760 at 1563.564 kb on + strand, within CA264_06760 at 1563.565 kb on - strand, within CA264_06760 at 1563.565 kb on - strand, within CA264_06760 at 1563.569 kb on - strand, within CA264_06760 at 1563.634 kb on + strand, within CA264_06760 at 1563.634 kb on + strand, within CA264_06760 at 1563.636 kb on + strand, within CA264_06760 at 1563.636 kb on + strand, within CA264_06760 at 1563.637 kb on - strand, within CA264_06760 at 1563.637 kb on - strand, within CA264_06760 at 1563.637 kb on - strand, within CA264_06760 at 1563.637 kb on - strand, within CA264_06760 at 1563.654 kb on + strand, within CA264_06760 at 1563.694 kb on + strand, within CA264_06760 at 1563.694 kb on + strand, within CA264_06760 at 1563.694 kb on + strand, within CA264_06760 at 1563.694 kb on + strand, within CA264_06760 at 1563.694 kb on + strand, within CA264_06760 at 1563.695 kb on - strand, within CA264_06760 at 1563.695 kb on - strand, within CA264_06760 at 1563.697 kb on - strand, within CA264_06760 at 1563.697 kb on - strand, within CA264_06760 at 1563.778 kb on - strand, within CA264_06760 at 1563.797 kb on - strand, within CA264_06760 at 1563.829 kb on + strand, within CA264_06760 at 1563.972 kb on + strand, within CA264_06760 at 1564.087 kb on + strand, within CA264_06760 at 1564.087 kb on + strand, within CA264_06760 at 1564.097 kb on + strand, within CA264_06760 at 1564.111 kb on + strand, within CA264_06760 at 1564.112 kb on - strand, within CA264_06760 at 1564.156 kb on + strand, within CA264_06760 at 1564.186 kb on + strand, within CA264_06760 at 1564.199 kb on - strand, within CA264_06760 at 1564.228 kb on - strand at 1564.228 kb on - strand at 1564.228 kb on - strand at 1564.228 kb on - strand at 1564.232 kb on - strand at 1564.232 kb on - strand at 1564.279 kb on + strand at 1564.350 kb on + strand at 1564.350 kb on + strand at 1564.352 kb on + strand at 1564.353 kb on - strand at 1564.353 kb on - strand at 1564.355 kb on + strand at 1564.356 kb on - strand at 1564.356 kb on - strand at 1564.436 kb on - strand at 1564.489 kb on - strand at 1564.521 kb on + strand at 1564.521 kb on + strand at 1564.521 kb on + strand at 1564.521 kb on + strand at 1564.522 kb on - strand at 1564.522 kb on - strand at 1564.522 kb on - strand at 1564.657 kb on + strand, within CA264_06765 at 1564.699 kb on + strand, within CA264_06765 at 1564.738 kb on + strand, within CA264_06765 at 1564.782 kb on - strand, within CA264_06765 at 1564.808 kb on - strand, within CA264_06765 at 1564.923 kb on - strand, within CA264_06765 at 1564.925 kb on + strand, within CA264_06765 at 1564.943 kb on + strand, within CA264_06765 at 1564.952 kb on + strand, within CA264_06765 at 1564.952 kb on + strand, within CA264_06765 at 1564.953 kb on - strand, within CA264_06765 at 1564.989 kb on - strand, within CA264_06765 at 1565.075 kb on + strand, within CA264_06765 at 1565.075 kb on + strand, within CA264_06765 at 1565.127 kb on + strand, within CA264_06765 at 1565.128 kb on - strand, within CA264_06765 at 1565.181 kb on + strand, within CA264_06765 at 1565.181 kb on + strand, within CA264_06765 at 1565.182 kb on - strand, within CA264_06765 at 1565.182 kb on - strand, within CA264_06765 at 1565.197 kb on + strand, within CA264_06765 at 1565.198 kb on - strand, within CA264_06765 at 1565.232 kb on + strand, within CA264_06765 at 1565.240 kb on + strand, within CA264_06765 at 1565.255 kb on - strand, within CA264_06765 at 1565.281 kb on + strand, within CA264_06765 at 1565.281 kb on + strand, within CA264_06765 at 1565.281 kb on + strand, within CA264_06765 at 1565.282 kb on - strand, within CA264_06765 at 1565.283 kb on + strand, within CA264_06765
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 1,562,185 + CA264_06750 0.46 -1.2 1,562,196 + CA264_06750 0.48 +0.0 1,562,197 - CA264_06750 0.48 +0.2 1,562,238 - CA264_06750 0.53 -0.7 1,562,279 - CA264_06750 0.58 +0.8 1,562,437 + CA264_06750 0.78 -0.5 1,562,437 + CA264_06750 0.78 -0.1 1,562,438 - CA264_06750 0.78 -1.3 1,562,455 + CA264_06750 0.80 -0.6 1,562,480 - CA264_06750 0.83 -1.5 1,562,529 + CA264_06750 0.89 +2.3 1,562,530 - CA264_06750 0.89 -0.5 1,562,547 + -1.0 1,562,547 + +0.0 1,562,594 + +0.4 1,562,594 + +0.7 1,562,679 - CA264_06755 0.13 +0.1 1,562,780 + CA264_06755 0.36 +1.6 1,562,781 - CA264_06755 0.36 -0.8 1,562,834 + CA264_06755 0.47 +0.8 1,562,835 - CA264_06755 0.48 +0.3 1,562,876 - CA264_06755 0.57 +0.1 1,562,880 - CA264_06755 0.57 -0.9 1,562,891 - CA264_06755 0.60 -1.2 1,562,945 + CA264_06755 0.72 +1.6 1,562,946 - CA264_06755 0.72 -2.9 1,562,957 + CA264_06755 0.74 +0.6 1,562,975 - CA264_06755 0.78 +0.9 1,562,980 + CA264_06755 0.79 +0.8 1,562,981 - CA264_06755 0.80 -1.8 1,562,981 - CA264_06755 0.80 +0.9 1,562,981 - CA264_06755 0.80 -2.4 1,563,056 + +0.5 1,563,092 - -0.8 1,563,093 + -0.8 1,563,250 + -0.3 1,563,250 + +2.6 1,563,503 + CA264_06760 0.29 -2.7 1,563,564 + CA264_06760 0.34 +2.3 1,563,564 + CA264_06760 0.34 +0.0 1,563,565 - CA264_06760 0.35 -1.0 1,563,565 - CA264_06760 0.35 +0.8 1,563,569 - CA264_06760 0.35 +0.2 1,563,634 + CA264_06760 0.41 -0.3 1,563,634 + CA264_06760 0.41 -0.9 1,563,636 + CA264_06760 0.41 -0.4 1,563,636 + CA264_06760 0.41 -0.1 1,563,637 - CA264_06760 0.41 +0.9 1,563,637 - CA264_06760 0.41 -1.4 1,563,637 - CA264_06760 0.41 -0.9 1,563,637 - CA264_06760 0.41 -1.2 1,563,654 + CA264_06760 0.42 -1.4 1,563,694 + CA264_06760 0.46 -0.4 1,563,694 + CA264_06760 0.46 -0.2 1,563,694 + CA264_06760 0.46 -0.8 1,563,694 + CA264_06760 0.46 -0.8 1,563,694 + CA264_06760 0.46 -0.8 1,563,695 - CA264_06760 0.46 -0.1 1,563,695 - CA264_06760 0.46 +0.0 1,563,697 - CA264_06760 0.46 -0.3 1,563,697 - CA264_06760 0.46 -0.5 1,563,778 - CA264_06760 0.53 +1.4 1,563,797 - CA264_06760 0.55 -0.1 1,563,829 + CA264_06760 0.57 -1.0 1,563,972 + CA264_06760 0.70 -0.8 1,564,087 + CA264_06760 0.80 -1.4 1,564,087 + CA264_06760 0.80 -0.9 1,564,097 + CA264_06760 0.81 -0.0 1,564,111 + CA264_06760 0.82 -2.2 1,564,112 - CA264_06760 0.82 -0.7 1,564,156 + CA264_06760 0.86 -0.4 1,564,186 + CA264_06760 0.88 -0.0 1,564,199 - CA264_06760 0.89 +1.4 1,564,228 - -0.4 1,564,228 - -0.5 1,564,228 - -0.7 1,564,228 - -0.1 1,564,232 - -0.9 1,564,232 - -0.1 1,564,279 + -0.6 1,564,350 + -0.3 1,564,350 + -0.6 1,564,352 + -0.5 1,564,353 - -0.1 1,564,353 - +0.8 1,564,355 + +0.1 1,564,356 - +0.6 1,564,356 - +0.1 1,564,436 - +0.4 1,564,489 - -0.6 1,564,521 + +1.3 1,564,521 + +0.6 1,564,521 + +0.9 1,564,521 + +1.1 1,564,522 - +0.4 1,564,522 - -0.2 1,564,522 - -0.6 1,564,657 + CA264_06765 0.16 +0.1 1,564,699 + CA264_06765 0.19 +0.1 1,564,738 + CA264_06765 0.22 +0.9 1,564,782 - CA264_06765 0.26 -0.4 1,564,808 - CA264_06765 0.28 +0.1 1,564,923 - CA264_06765 0.37 -1.0 1,564,925 + CA264_06765 0.37 +0.5 1,564,943 + CA264_06765 0.38 -0.5 1,564,952 + CA264_06765 0.39 -0.9 1,564,952 + CA264_06765 0.39 +2.0 1,564,953 - CA264_06765 0.39 +1.4 1,564,989 - CA264_06765 0.42 +0.6 1,565,075 + CA264_06765 0.48 -0.8 1,565,075 + CA264_06765 0.48 -1.8 1,565,127 + CA264_06765 0.52 -0.5 1,565,128 - CA264_06765 0.52 -0.4 1,565,181 + CA264_06765 0.57 -0.8 1,565,181 + CA264_06765 0.57 +0.3 1,565,182 - CA264_06765 0.57 -0.3 1,565,182 - CA264_06765 0.57 -0.2 1,565,197 + CA264_06765 0.58 -0.7 1,565,198 - CA264_06765 0.58 +0.4 1,565,232 + CA264_06765 0.60 -0.8 1,565,240 + CA264_06765 0.61 -0.9 1,565,255 - CA264_06765 0.62 -1.8 1,565,281 + CA264_06765 0.64 -1.2 1,565,281 + CA264_06765 0.64 -0.3 1,565,281 + CA264_06765 0.64 +0.3 1,565,282 - CA264_06765 0.64 +0.3 1,565,283 + CA264_06765 0.64 +0.2
Or see this region's nucleotide sequence