Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04630 and CA264_04635 are separated by 194 nucleotides CA264_04635 and CA264_04640 overlap by 17 nucleotides CA264_04640 and CA264_04645 are separated by 2 nucleotides
CA264_04630: CA264_04630 - TIGR00341 family protein, at 1,070,866 to 1,072,743
_04630
CA264_04635: CA264_04635 - riboflavin biosynthesis protein RibF, at 1,072,938 to 1,073,870
_04635
CA264_04640: CA264_04640 - tRNA pseudouridine(55) synthase, at 1,073,854 to 1,074,552
_04640
CA264_04645: CA264_04645 - UDP-diphosphatase, at 1,074,555 to 1,075,388
_04645
Position (kb)
1072
1073
1074 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1071.977 kb on + strand, within CA264_04630 at 1072.000 kb on + strand, within CA264_04630 at 1072.001 kb on - strand, within CA264_04630 at 1072.070 kb on + strand, within CA264_04630 at 1072.376 kb on - strand, within CA264_04630 at 1072.376 kb on - strand, within CA264_04630 at 1072.378 kb on - strand, within CA264_04630 at 1072.533 kb on + strand, within CA264_04630 at 1072.595 kb on + strand at 1072.595 kb on + strand at 1072.596 kb on - strand at 1072.651 kb on + strand at 1072.657 kb on + strand at 1072.658 kb on - strand at 1072.682 kb on - strand at 1072.722 kb on - strand at 1072.726 kb on + strand at 1072.727 kb on - strand at 1072.727 kb on - strand at 1072.727 kb on - strand at 1072.730 kb on - strand at 1072.732 kb on + strand at 1072.732 kb on + strand at 1072.732 kb on + strand at 1072.752 kb on - strand at 1072.774 kb on - strand at 1072.777 kb on + strand at 1072.796 kb on + strand at 1072.797 kb on - strand at 1072.826 kb on - strand at 1072.826 kb on - strand at 1072.844 kb on - strand at 1072.850 kb on - strand at 1072.851 kb on + strand at 1072.852 kb on - strand at 1072.852 kb on - strand at 1072.924 kb on + strand at 1072.925 kb on - strand at 1072.940 kb on - strand at 1073.850 kb on + strand at 1073.862 kb on + strand at 1073.862 kb on + strand at 1073.937 kb on + strand, within CA264_04640 at 1073.937 kb on + strand, within CA264_04640 at 1073.937 kb on + strand, within CA264_04640 at 1073.937 kb on + strand, within CA264_04640 at 1073.938 kb on - strand, within CA264_04640 at 1074.022 kb on + strand, within CA264_04640 at 1074.023 kb on - strand, within CA264_04640 at 1074.026 kb on + strand, within CA264_04640 at 1074.026 kb on + strand, within CA264_04640 at 1074.027 kb on - strand, within CA264_04640 at 1074.043 kb on + strand, within CA264_04640 at 1074.043 kb on + strand, within CA264_04640 at 1074.043 kb on + strand, within CA264_04640 at 1074.044 kb on - strand, within CA264_04640 at 1074.046 kb on + strand, within CA264_04640 at 1074.047 kb on - strand, within CA264_04640 at 1074.052 kb on - strand, within CA264_04640 at 1074.052 kb on - strand, within CA264_04640 at 1074.185 kb on + strand, within CA264_04640 at 1074.326 kb on - strand, within CA264_04640 at 1074.326 kb on - strand, within CA264_04640 at 1074.326 kb on - strand, within CA264_04640 at 1074.328 kb on - strand, within CA264_04640 at 1074.328 kb on - strand, within CA264_04640 at 1074.339 kb on - strand, within CA264_04640 at 1074.515 kb on - strand at 1074.515 kb on - strand at 1074.515 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.517 kb on - strand at 1074.552 kb on + strand at 1074.552 kb on + strand at 1074.552 kb on + strand at 1074.556 kb on + strand at 1074.556 kb on + strand at 1074.557 kb on - strand at 1074.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 1,071,977 + CA264_04630 0.59 +2.5 1,072,000 + CA264_04630 0.60 +2.9 1,072,001 - CA264_04630 0.60 -0.1 1,072,070 + CA264_04630 0.64 -0.5 1,072,376 - CA264_04630 0.80 +0.6 1,072,376 - CA264_04630 0.80 +0.7 1,072,378 - CA264_04630 0.81 -0.6 1,072,533 + CA264_04630 0.89 +0.5 1,072,595 + +1.2 1,072,595 + -1.4 1,072,596 - +1.5 1,072,651 + -0.8 1,072,657 + -1.1 1,072,658 - -0.4 1,072,682 - +0.5 1,072,722 - -0.1 1,072,726 + +0.1 1,072,727 - -0.1 1,072,727 - -1.4 1,072,727 - -1.0 1,072,730 - -1.1 1,072,732 + +0.2 1,072,732 + -0.0 1,072,732 + +0.8 1,072,752 - -0.5 1,072,774 - -1.1 1,072,777 + +1.2 1,072,796 + -0.4 1,072,797 - -0.4 1,072,826 - -0.7 1,072,826 - -0.0 1,072,844 - -0.1 1,072,850 - -1.1 1,072,851 + -0.6 1,072,852 - -1.0 1,072,852 - +0.4 1,072,924 + -0.1 1,072,925 - -0.1 1,072,940 - -0.2 1,073,850 + -0.3 1,073,862 + -0.3 1,073,862 + +0.6 1,073,937 + CA264_04640 0.12 -0.5 1,073,937 + CA264_04640 0.12 -0.1 1,073,937 + CA264_04640 0.12 +0.7 1,073,937 + CA264_04640 0.12 +1.8 1,073,938 - CA264_04640 0.12 +0.0 1,074,022 + CA264_04640 0.24 +0.1 1,074,023 - CA264_04640 0.24 -0.1 1,074,026 + CA264_04640 0.25 +1.1 1,074,026 + CA264_04640 0.25 +0.4 1,074,027 - CA264_04640 0.25 -1.0 1,074,043 + CA264_04640 0.27 -0.6 1,074,043 + CA264_04640 0.27 +0.2 1,074,043 + CA264_04640 0.27 +0.0 1,074,044 - CA264_04640 0.27 +0.8 1,074,046 + CA264_04640 0.27 +1.6 1,074,047 - CA264_04640 0.28 -2.0 1,074,052 - CA264_04640 0.28 +0.2 1,074,052 - CA264_04640 0.28 +0.1 1,074,185 + CA264_04640 0.47 +1.1 1,074,326 - CA264_04640 0.68 +1.7 1,074,326 - CA264_04640 0.68 -1.8 1,074,326 - CA264_04640 0.68 +1.0 1,074,328 - CA264_04640 0.68 -0.6 1,074,328 - CA264_04640 0.68 -0.2 1,074,339 - CA264_04640 0.69 +1.6 1,074,515 - -1.3 1,074,515 - +0.2 1,074,515 - -0.4 1,074,517 - -1.7 1,074,517 - +0.0 1,074,517 - -0.2 1,074,517 - +0.1 1,074,517 - -0.5 1,074,552 + -0.0 1,074,552 + +0.6 1,074,552 + -0.9 1,074,556 + +0.2 1,074,556 + -0.9 1,074,557 - -1.7 1,074,557 - +1.1
Or see this region's nucleotide sequence