Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04570

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04565 and CA264_04570 are separated by 91 nucleotidesCA264_04570 and CA264_04575 are separated by 146 nucleotides CA264_04565: CA264_04565 - histidine--tRNA ligase, at 1,054,805 to 1,056,202 _04565 CA264_04570: CA264_04570 - undecaprenyl-phosphate glucose phosphotransferase, at 1,056,294 to 1,057,667 _04570 CA264_04575: CA264_04575 - glycosyltransferase, at 1,057,814 to 1,058,929 _04575 Position (kb) 1056 1057 1058Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1056.229 kb on - strandat 1056.232 kb on - strandat 1056.277 kb on - strandat 1056.296 kb on - strandat 1056.321 kb on - strandat 1056.327 kb on - strandat 1056.327 kb on - strandat 1056.327 kb on - strandat 1056.328 kb on + strandat 1056.328 kb on + strandat 1056.330 kb on + strandat 1056.332 kb on - strandat 1056.337 kb on + strandat 1056.337 kb on + strandat 1056.400 kb on - strandat 1056.402 kb on - strandat 1056.418 kb on + strandat 1056.418 kb on + strandat 1056.537 kb on + strand, within CA264_04570at 1056.587 kb on + strand, within CA264_04570at 1056.601 kb on - strand, within CA264_04570at 1056.693 kb on + strand, within CA264_04570at 1056.694 kb on - strand, within CA264_04570at 1056.694 kb on - strand, within CA264_04570at 1056.750 kb on + strand, within CA264_04570at 1056.801 kb on + strand, within CA264_04570at 1056.802 kb on - strand, within CA264_04570at 1056.802 kb on - strand, within CA264_04570at 1056.813 kb on + strand, within CA264_04570at 1056.837 kb on + strand, within CA264_04570at 1056.837 kb on + strand, within CA264_04570at 1056.842 kb on + strand, within CA264_04570at 1056.843 kb on - strand, within CA264_04570at 1056.915 kb on + strand, within CA264_04570at 1056.927 kb on + strand, within CA264_04570at 1056.968 kb on - strand, within CA264_04570at 1057.008 kb on - strand, within CA264_04570at 1057.023 kb on + strand, within CA264_04570at 1057.069 kb on + strand, within CA264_04570at 1057.070 kb on - strand, within CA264_04570at 1057.070 kb on - strand, within CA264_04570at 1057.070 kb on - strand, within CA264_04570at 1057.116 kb on + strand, within CA264_04570at 1057.129 kb on + strand, within CA264_04570at 1057.155 kb on - strand, within CA264_04570at 1057.179 kb on - strand, within CA264_04570at 1057.215 kb on + strand, within CA264_04570at 1057.216 kb on - strand, within CA264_04570at 1057.266 kb on - strand, within CA264_04570at 1057.267 kb on + strand, within CA264_04570at 1057.267 kb on + strand, within CA264_04570at 1057.267 kb on + strand, within CA264_04570at 1057.267 kb on + strand, within CA264_04570at 1057.299 kb on - strand, within CA264_04570at 1057.321 kb on - strand, within CA264_04570at 1057.335 kb on + strand, within CA264_04570at 1057.345 kb on + strand, within CA264_04570at 1057.345 kb on + strand, within CA264_04570at 1057.346 kb on - strand, within CA264_04570at 1057.346 kb on - strand, within CA264_04570at 1057.352 kb on - strand, within CA264_04570at 1057.391 kb on + strand, within CA264_04570at 1057.420 kb on + strand, within CA264_04570at 1057.420 kb on + strand, within CA264_04570at 1057.420 kb on + strand, within CA264_04570at 1057.421 kb on - strand, within CA264_04570at 1057.421 kb on - strand, within CA264_04570at 1057.422 kb on + strand, within CA264_04570at 1057.423 kb on - strand, within CA264_04570at 1057.446 kb on + strand, within CA264_04570at 1057.481 kb on + strand, within CA264_04570at 1057.481 kb on + strand, within CA264_04570at 1057.481 kb on + strand, within CA264_04570at 1057.482 kb on - strand, within CA264_04570at 1057.482 kb on - strand, within CA264_04570at 1057.482 kb on - strand, within CA264_04570at 1057.482 kb on - strand, within CA264_04570at 1057.486 kb on + strand, within CA264_04570at 1057.497 kb on + strand, within CA264_04570at 1057.497 kb on + strand, within CA264_04570at 1057.521 kb on + strand, within CA264_04570at 1057.522 kb on - strand, within CA264_04570at 1057.533 kb on + strandat 1057.534 kb on - strandat 1057.534 kb on - strandat 1057.537 kb on - strandat 1057.550 kb on - strandat 1057.593 kb on + strandat 1057.593 kb on + strandat 1057.594 kb on - strandat 1057.624 kb on - strandat 1057.624 kb on - strandat 1057.624 kb on - strandat 1057.641 kb on + strandat 1057.643 kb on + strandat 1057.645 kb on + strandat 1057.645 kb on + strandat 1057.646 kb on - strandat 1057.668 kb on - strandat 1057.668 kb on - strandat 1057.681 kb on + strandat 1057.682 kb on - strandat 1057.698 kb on + strandat 1057.721 kb on + strandat 1057.721 kb on + strandat 1057.722 kb on - strandat 1057.722 kb on - strandat 1057.723 kb on + strandat 1057.723 kb on + strandat 1057.724 kb on - strandat 1057.724 kb on - strandat 1057.724 kb on - strandat 1057.762 kb on - strandat 1057.762 kb on - strandat 1057.771 kb on - strandat 1057.771 kb on - strandat 1057.790 kb on - strandat 1057.798 kb on - strandat 1057.798 kb on - strandat 1057.833 kb on - strandat 1057.845 kb on - strandat 1057.846 kb on + strandat 1057.891 kb on + strandat 1057.891 kb on + strandat 1057.891 kb on + strandat 1057.894 kb on + strandat 1057.935 kb on - strand, within CA264_04575at 1057.935 kb on - strand, within CA264_04575at 1057.946 kb on + strand, within CA264_04575at 1057.946 kb on + strand, within CA264_04575at 1057.997 kb on + strand, within CA264_04575at 1057.997 kb on + strand, within CA264_04575at 1057.997 kb on + strand, within CA264_04575at 1057.998 kb on - strand, within CA264_04575at 1057.998 kb on - strand, within CA264_04575at 1057.998 kb on - strand, within CA264_04575at 1057.998 kb on - strand, within CA264_04575at 1058.072 kb on - strand, within CA264_04575at 1058.075 kb on - strand, within CA264_04575at 1058.122 kb on + strand, within CA264_04575at 1058.122 kb on + strand, within CA264_04575at 1058.123 kb on - strand, within CA264_04575at 1058.174 kb on - strand, within CA264_04575at 1058.189 kb on - strand, within CA264_04575at 1058.279 kb on - strand, within CA264_04575at 1058.279 kb on - strand, within CA264_04575at 1058.281 kb on - strand, within CA264_04575at 1058.286 kb on - strand, within CA264_04575at 1058.286 kb on - strand, within CA264_04575at 1058.286 kb on - strand, within CA264_04575at 1058.286 kb on - strand, within CA264_04575at 1058.288 kb on + strand, within CA264_04575at 1058.288 kb on + strand, within CA264_04575at 1058.289 kb on - strand, within CA264_04575at 1058.289 kb on - strand, within CA264_04575at 1058.289 kb on - strand, within CA264_04575at 1058.308 kb on - strand, within CA264_04575at 1058.308 kb on - strand, within CA264_04575at 1058.308 kb on - strand, within CA264_04575at 1058.384 kb on - strand, within CA264_04575at 1058.385 kb on + strand, within CA264_04575at 1058.386 kb on - strand, within CA264_04575at 1058.429 kb on - strand, within CA264_04575at 1058.429 kb on - strand, within CA264_04575at 1058.430 kb on + strand, within CA264_04575at 1058.430 kb on + strand, within CA264_04575at 1058.431 kb on - strand, within CA264_04575at 1058.455 kb on + strand, within CA264_04575at 1058.456 kb on - strand, within CA264_04575at 1058.472 kb on - strand, within CA264_04575at 1058.476 kb on - strand, within CA264_04575at 1058.485 kb on + strand, within CA264_04575at 1058.486 kb on - strand, within CA264_04575at 1058.547 kb on + strand, within CA264_04575at 1058.547 kb on + strand, within CA264_04575at 1058.563 kb on - strand, within CA264_04575at 1058.566 kb on + strand, within CA264_04575at 1058.583 kb on + strand, within CA264_04575at 1058.590 kb on + strand, within CA264_04575at 1058.590 kb on + strand, within CA264_04575at 1058.590 kb on + strand, within CA264_04575at 1058.590 kb on + strand, within CA264_04575at 1058.591 kb on - strand, within CA264_04575at 1058.591 kb on - strand, within CA264_04575at 1058.594 kb on + strand, within CA264_04575at 1058.594 kb on + strand, within CA264_04575at 1058.595 kb on - strand, within CA264_04575at 1058.595 kb on - strand, within CA264_04575at 1058.595 kb on - strand, within CA264_04575at 1058.595 kb on - strand, within CA264_04575at 1058.645 kb on + strand, within CA264_04575at 1058.646 kb on - strand, within CA264_04575at 1058.646 kb on - strand, within CA264_04575at 1058.649 kb on - strand, within CA264_04575at 1058.652 kb on - strand, within CA264_04575at 1058.652 kb on - strand, within CA264_04575at 1058.658 kb on + strand, within CA264_04575at 1058.659 kb on - strand, within CA264_04575at 1058.659 kb on - strand, within CA264_04575at 1058.659 kb on - strand, within CA264_04575

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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1,056,229 - -0.8
1,056,232 - -0.4
1,056,277 - -0.4
1,056,296 - +2.8
1,056,321 - -0.4
1,056,327 - +0.9
1,056,327 - -0.6
1,056,327 - -1.9
1,056,328 + -1.3
1,056,328 + +2.6
1,056,330 + -2.6
1,056,332 - -0.1
1,056,337 + +0.0
1,056,337 + +0.6
1,056,400 - +0.6
1,056,402 - -0.2
1,056,418 + +0.4
1,056,418 + +0.9
1,056,537 + CA264_04570 0.18 -0.5
1,056,587 + CA264_04570 0.21 +1.4
1,056,601 - CA264_04570 0.22 +0.8
1,056,693 + CA264_04570 0.29 -0.8
1,056,694 - CA264_04570 0.29 +1.1
1,056,694 - CA264_04570 0.29 -0.9
1,056,750 + CA264_04570 0.33 -1.5
1,056,801 + CA264_04570 0.37 +0.8
1,056,802 - CA264_04570 0.37 -0.4
1,056,802 - CA264_04570 0.37 -0.1
1,056,813 + CA264_04570 0.38 -0.5
1,056,837 + CA264_04570 0.40 -0.9
1,056,837 + CA264_04570 0.40 -0.2
1,056,842 + CA264_04570 0.40 -0.8
1,056,843 - CA264_04570 0.40 -0.2
1,056,915 + CA264_04570 0.45 +2.4
1,056,927 + CA264_04570 0.46 -0.5
1,056,968 - CA264_04570 0.49 -0.8
1,057,008 - CA264_04570 0.52 -1.8
1,057,023 + CA264_04570 0.53 +0.8
1,057,069 + CA264_04570 0.56 -0.3
1,057,070 - CA264_04570 0.56 -0.0
1,057,070 - CA264_04570 0.56 -1.3
1,057,070 - CA264_04570 0.56 -1.0
1,057,116 + CA264_04570 0.60 +0.4
1,057,129 + CA264_04570 0.61 +0.2
1,057,155 - CA264_04570 0.63 +0.5
1,057,179 - CA264_04570 0.64 +0.8
1,057,215 + CA264_04570 0.67 -0.1
1,057,216 - CA264_04570 0.67 -0.4
1,057,266 - CA264_04570 0.71 -1.4
1,057,267 + CA264_04570 0.71 -0.0
1,057,267 + CA264_04570 0.71 -0.7
1,057,267 + CA264_04570 0.71 +0.5
1,057,267 + CA264_04570 0.71 -2.1
1,057,299 - CA264_04570 0.73 +0.2
1,057,321 - CA264_04570 0.75 +0.1
1,057,335 + CA264_04570 0.76 -0.9
1,057,345 + CA264_04570 0.76 -0.3
1,057,345 + CA264_04570 0.76 -0.3
1,057,346 - CA264_04570 0.77 -1.0
1,057,346 - CA264_04570 0.77 +0.9
1,057,352 - CA264_04570 0.77 +0.0
1,057,391 + CA264_04570 0.80 -0.9
1,057,420 + CA264_04570 0.82 +0.8
1,057,420 + CA264_04570 0.82 +0.5
1,057,420 + CA264_04570 0.82 -0.5
1,057,421 - CA264_04570 0.82 -0.7
1,057,421 - CA264_04570 0.82 +1.2
1,057,422 + CA264_04570 0.82 -0.1
1,057,423 - CA264_04570 0.82 -1.7
1,057,446 + CA264_04570 0.84 -0.5
1,057,481 + CA264_04570 0.86 -1.6
1,057,481 + CA264_04570 0.86 -0.4
1,057,481 + CA264_04570 0.86 -0.8
1,057,482 - CA264_04570 0.86 -0.5
1,057,482 - CA264_04570 0.86 -0.4
1,057,482 - CA264_04570 0.86 -0.1
1,057,482 - CA264_04570 0.86 -0.3
1,057,486 + CA264_04570 0.87 +0.3
1,057,497 + CA264_04570 0.88 -3.1
1,057,497 + CA264_04570 0.88 +0.8
1,057,521 + CA264_04570 0.89 +1.1
1,057,522 - CA264_04570 0.89 +1.6
1,057,533 + -0.2
1,057,534 - +0.4
1,057,534 - -0.1
1,057,537 - +0.3
1,057,550 - -0.9
1,057,593 + +2.2
1,057,593 + -0.5
1,057,594 - +0.5
1,057,624 - +1.1
1,057,624 - -0.6
1,057,624 - -0.5
1,057,641 + -1.0
1,057,643 + -0.0
1,057,645 + -1.2
1,057,645 + -1.4
1,057,646 - +0.0
1,057,668 - -0.3
1,057,668 - -1.9
1,057,681 + +1.0
1,057,682 - -0.3
1,057,698 + -0.2
1,057,721 + -0.4
1,057,721 + -1.8
1,057,722 - -1.9
1,057,722 - +1.1
1,057,723 + -0.4
1,057,723 + +0.7
1,057,724 - +2.7
1,057,724 - -2.0
1,057,724 - -0.5
1,057,762 - -0.9
1,057,762 - +0.1
1,057,771 - +1.2
1,057,771 - -2.4
1,057,790 - +0.2
1,057,798 - -1.0
1,057,798 - -1.1
1,057,833 - -0.7
1,057,845 - +0.7
1,057,846 + -0.9
1,057,891 + -0.8
1,057,891 + -0.5
1,057,891 + +1.6
1,057,894 + -0.3
1,057,935 - CA264_04575 0.11 +1.5
1,057,935 - CA264_04575 0.11 -0.4
1,057,946 + CA264_04575 0.12 +1.1
1,057,946 + CA264_04575 0.12 +0.4
1,057,997 + CA264_04575 0.16 +1.4
1,057,997 + CA264_04575 0.16 -0.9
1,057,997 + CA264_04575 0.16 +0.2
1,057,998 - CA264_04575 0.16 -0.6
1,057,998 - CA264_04575 0.16 -1.1
1,057,998 - CA264_04575 0.16 +0.5
1,057,998 - CA264_04575 0.16 -0.1
1,058,072 - CA264_04575 0.23 -0.6
1,058,075 - CA264_04575 0.23 +0.5
1,058,122 + CA264_04575 0.28 -0.1
1,058,122 + CA264_04575 0.28 -0.5
1,058,123 - CA264_04575 0.28 -0.4
1,058,174 - CA264_04575 0.32 -0.3
1,058,189 - CA264_04575 0.34 -1.4
1,058,279 - CA264_04575 0.42 -1.2
1,058,279 - CA264_04575 0.42 +1.4
1,058,281 - CA264_04575 0.42 +0.1
1,058,286 - CA264_04575 0.42 +0.2
1,058,286 - CA264_04575 0.42 -0.7
1,058,286 - CA264_04575 0.42 -0.4
1,058,286 - CA264_04575 0.42 -0.1
1,058,288 + CA264_04575 0.42 +0.3
1,058,288 + CA264_04575 0.42 +0.1
1,058,289 - CA264_04575 0.43 -0.9
1,058,289 - CA264_04575 0.43 -0.8
1,058,289 - CA264_04575 0.43 -1.0
1,058,308 - CA264_04575 0.44 +0.1
1,058,308 - CA264_04575 0.44 -0.3
1,058,308 - CA264_04575 0.44 -0.1
1,058,384 - CA264_04575 0.51 -0.1
1,058,385 + CA264_04575 0.51 +0.8
1,058,386 - CA264_04575 0.51 -0.2
1,058,429 - CA264_04575 0.55 -0.9
1,058,429 - CA264_04575 0.55 -0.9
1,058,430 + CA264_04575 0.55 -0.7
1,058,430 + CA264_04575 0.55 +0.4
1,058,431 - CA264_04575 0.55 +1.4
1,058,455 + CA264_04575 0.57 -0.6
1,058,456 - CA264_04575 0.58 -0.5
1,058,472 - CA264_04575 0.59 +0.1
1,058,476 - CA264_04575 0.59 -0.1
1,058,485 + CA264_04575 0.60 -1.5
1,058,486 - CA264_04575 0.60 -0.2
1,058,547 + CA264_04575 0.66 -0.2
1,058,547 + CA264_04575 0.66 +0.5
1,058,563 - CA264_04575 0.67 -1.5
1,058,566 + CA264_04575 0.67 -1.5
1,058,583 + CA264_04575 0.69 +0.8
1,058,590 + CA264_04575 0.70 -0.6
1,058,590 + CA264_04575 0.70 -0.2
1,058,590 + CA264_04575 0.70 +0.2
1,058,590 + CA264_04575 0.70 -0.8
1,058,591 - CA264_04575 0.70 -0.6
1,058,591 - CA264_04575 0.70 +0.5
1,058,594 + CA264_04575 0.70 +0.1
1,058,594 + CA264_04575 0.70 -0.6
1,058,595 - CA264_04575 0.70 +0.5
1,058,595 - CA264_04575 0.70 -1.4
1,058,595 - CA264_04575 0.70 -0.0
1,058,595 - CA264_04575 0.70 +0.2
1,058,645 + CA264_04575 0.74 +0.3
1,058,646 - CA264_04575 0.75 -0.5
1,058,646 - CA264_04575 0.75 +0.8
1,058,649 - CA264_04575 0.75 -0.8
1,058,652 - CA264_04575 0.75 -2.1
1,058,652 - CA264_04575 0.75 -0.1
1,058,658 + CA264_04575 0.76 -0.9
1,058,659 - CA264_04575 0.76 -0.6
1,058,659 - CA264_04575 0.76 -0.3
1,058,659 - CA264_04575 0.76 -1.5

Or see this region's nucleotide sequence