Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04165

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04155 and CA264_04160 are separated by 6 nucleotidesCA264_04160 and CA264_04165 are separated by 263 nucleotidesCA264_04165 and CA264_04170 are separated by 609 nucleotides CA264_04155: CA264_04155 - hypothetical protein, at 960,221 to 960,670 _04155 CA264_04160: CA264_04160 - hypothetical protein, at 960,677 to 960,901 _04160 CA264_04165: CA264_04165 - isoaspartyl peptidase/L-asparaginase, at 961,165 to 962,079 _04165 CA264_04170: CA264_04170 - cation transporter, at 962,689 to 963,621 _04170 Position (kb) 961 962 963Strain fitness (log2 ratio) -2 -1 0 1 2 3at 960.193 kb on + strandat 960.217 kb on - strandat 960.217 kb on - strandat 960.266 kb on + strand, within CA264_04155at 960.299 kb on + strand, within CA264_04155at 960.339 kb on + strand, within CA264_04155at 960.339 kb on + strand, within CA264_04155at 960.394 kb on + strand, within CA264_04155at 960.395 kb on - strand, within CA264_04155at 960.439 kb on + strand, within CA264_04155at 960.439 kb on + strand, within CA264_04155at 960.440 kb on - strand, within CA264_04155at 960.440 kb on - strand, within CA264_04155at 960.471 kb on - strand, within CA264_04155at 960.621 kb on - strand, within CA264_04155at 960.685 kb on - strandat 960.691 kb on - strandat 960.724 kb on + strand, within CA264_04160at 960.728 kb on + strand, within CA264_04160at 960.728 kb on + strand, within CA264_04160at 960.728 kb on + strand, within CA264_04160at 960.729 kb on - strand, within CA264_04160at 960.729 kb on - strand, within CA264_04160at 960.872 kb on + strand, within CA264_04160at 960.873 kb on - strand, within CA264_04160at 960.873 kb on - strand, within CA264_04160at 960.877 kb on - strand, within CA264_04160at 960.877 kb on - strand, within CA264_04160at 960.877 kb on - strand, within CA264_04160at 960.911 kb on - strandat 960.912 kb on + strandat 960.913 kb on - strandat 960.918 kb on + strandat 960.918 kb on + strandat 960.928 kb on + strandat 960.928 kb on + strandat 961.040 kb on - strandat 961.166 kb on + strandat 961.167 kb on - strandat 961.170 kb on + strandat 961.171 kb on - strandat 961.221 kb on - strandat 961.283 kb on - strand, within CA264_04165at 961.283 kb on - strand, within CA264_04165at 961.380 kb on - strand, within CA264_04165at 961.381 kb on + strand, within CA264_04165at 961.445 kb on + strand, within CA264_04165at 961.461 kb on - strand, within CA264_04165at 961.504 kb on + strand, within CA264_04165at 961.505 kb on - strand, within CA264_04165at 961.611 kb on - strand, within CA264_04165at 961.630 kb on - strand, within CA264_04165at 961.716 kb on + strand, within CA264_04165at 961.775 kb on + strand, within CA264_04165at 961.776 kb on - strand, within CA264_04165at 961.783 kb on - strand, within CA264_04165at 962.016 kb on + strandat 962.097 kb on - strandat 962.215 kb on - strandat 962.215 kb on - strandat 962.216 kb on + strandat 962.216 kb on + strandat 962.217 kb on - strandat 962.217 kb on - strandat 962.217 kb on - strandat 962.217 kb on - strandat 962.226 kb on + strandat 962.226 kb on + strandat 962.280 kb on - strandat 962.309 kb on + strandat 962.309 kb on + strandat 962.326 kb on - strandat 962.357 kb on + strandat 962.419 kb on - strandat 962.490 kb on + strandat 962.491 kb on - strandat 962.548 kb on - strandat 962.638 kb on - strandat 962.638 kb on - strandat 962.672 kb on + strandat 962.673 kb on - strandat 962.674 kb on + strandat 962.675 kb on - strandat 962.675 kb on - strandat 962.677 kb on + strandat 962.678 kb on - strandat 962.678 kb on - strandat 962.679 kb on + strandat 962.696 kb on + strandat 962.696 kb on + strandat 962.764 kb on - strandat 962.852 kb on + strand, within CA264_04170at 962.853 kb on - strand, within CA264_04170at 962.917 kb on + strand, within CA264_04170at 962.947 kb on - strand, within CA264_04170at 962.977 kb on + strand, within CA264_04170at 962.988 kb on + strand, within CA264_04170at 962.989 kb on - strand, within CA264_04170at 963.024 kb on + strand, within CA264_04170at 963.025 kb on - strand, within CA264_04170at 963.034 kb on + strand, within CA264_04170at 963.035 kb on - strand, within CA264_04170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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960,193 + +0.2
960,217 - +1.5
960,217 - -0.0
960,266 + CA264_04155 0.10 -0.2
960,299 + CA264_04155 0.17 -0.1
960,339 + CA264_04155 0.26 +0.7
960,339 + CA264_04155 0.26 -0.4
960,394 + CA264_04155 0.38 -1.5
960,395 - CA264_04155 0.39 +0.1
960,439 + CA264_04155 0.48 -2.4
960,439 + CA264_04155 0.48 -0.4
960,440 - CA264_04155 0.49 -0.9
960,440 - CA264_04155 0.49 -2.1
960,471 - CA264_04155 0.56 -1.3
960,621 - CA264_04155 0.89 +0.1
960,685 - -0.1
960,691 - -1.4
960,724 + CA264_04160 0.21 +0.6
960,728 + CA264_04160 0.23 +0.7
960,728 + CA264_04160 0.23 -0.6
960,728 + CA264_04160 0.23 +0.1
960,729 - CA264_04160 0.23 -1.5
960,729 - CA264_04160 0.23 -1.0
960,872 + CA264_04160 0.87 -0.6
960,873 - CA264_04160 0.87 -0.1
960,873 - CA264_04160 0.87 -1.3
960,877 - CA264_04160 0.89 -0.8
960,877 - CA264_04160 0.89 +0.5
960,877 - CA264_04160 0.89 -1.0
960,911 - +0.5
960,912 + -0.3
960,913 - -0.2
960,918 + -0.2
960,918 + -0.8
960,928 + -0.5
960,928 + +0.1
961,040 - +0.7
961,166 + +1.9
961,167 - +1.7
961,170 + -1.0
961,171 - -0.8
961,221 - +0.7
961,283 - CA264_04165 0.13 +0.4
961,283 - CA264_04165 0.13 -0.3
961,380 - CA264_04165 0.23 +0.1
961,381 + CA264_04165 0.24 +0.1
961,445 + CA264_04165 0.31 -2.4
961,461 - CA264_04165 0.32 +0.5
961,504 + CA264_04165 0.37 +2.8
961,505 - CA264_04165 0.37 -0.9
961,611 - CA264_04165 0.49 +1.1
961,630 - CA264_04165 0.51 -0.1
961,716 + CA264_04165 0.60 +0.1
961,775 + CA264_04165 0.67 -0.9
961,776 - CA264_04165 0.67 +0.8
961,783 - CA264_04165 0.68 -1.5
962,016 + +0.5
962,097 - -0.5
962,215 - +2.7
962,215 - -0.7
962,216 + -0.1
962,216 + -0.3
962,217 - +0.5
962,217 - +0.1
962,217 - -1.5
962,217 - -0.5
962,226 + +0.8
962,226 + +1.9
962,280 - -1.8
962,309 + +0.1
962,309 + -0.1
962,326 - -1.3
962,357 + +2.2
962,419 - +0.2
962,490 + -0.3
962,491 - -0.1
962,548 - -0.9
962,638 - -1.8
962,638 - +0.3
962,672 + -0.9
962,673 - -0.2
962,674 + +0.6
962,675 - -2.2
962,675 - +0.1
962,677 + -1.3
962,678 - -1.0
962,678 - -0.1
962,679 + +0.5
962,696 + -0.9
962,696 + -1.0
962,764 - +0.2
962,852 + CA264_04170 0.17 +0.5
962,853 - CA264_04170 0.18 -0.6
962,917 + CA264_04170 0.24 +1.1
962,947 - CA264_04170 0.28 -0.1
962,977 + CA264_04170 0.31 -2.2
962,988 + CA264_04170 0.32 +1.4
962,989 - CA264_04170 0.32 -0.6
963,024 + CA264_04170 0.36 -0.4
963,025 - CA264_04170 0.36 -0.7
963,034 + CA264_04170 0.37 -0.6
963,035 - CA264_04170 0.37 +0.5

Or see this region's nucleotide sequence