Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04145

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04135 and CA264_04140 are separated by 60 nucleotidesCA264_04140 and CA264_04145 are separated by 15 nucleotidesCA264_04145 and CA264_04150 are separated by 171 nucleotidesCA264_04150 and CA264_04155 are separated by 235 nucleotides CA264_04135: CA264_04135 - hypothetical protein, at 957,751 to 958,164 _04135 CA264_04140: CA264_04140 - cyanophycinase, at 958,225 to 959,118 _04140 CA264_04145: CA264_04145 - hypothetical protein, at 959,134 to 959,526 _04145 CA264_04150: CA264_04150 - hypothetical protein, at 959,698 to 959,985 _04150 CA264_04155: CA264_04155 - hypothetical protein, at 960,221 to 960,670 _04155 Position (kb) 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 958.146 kb on + strandat 958.147 kb on - strandat 958.166 kb on - strandat 958.173 kb on + strandat 958.174 kb on - strandat 958.195 kb on + strandat 958.197 kb on + strandat 958.211 kb on + strandat 958.212 kb on - strandat 958.242 kb on - strandat 958.255 kb on - strandat 958.302 kb on - strandat 958.399 kb on - strand, within CA264_04140at 958.497 kb on - strand, within CA264_04140at 958.568 kb on + strand, within CA264_04140at 958.569 kb on - strand, within CA264_04140at 958.571 kb on + strand, within CA264_04140at 958.670 kb on - strand, within CA264_04140at 958.671 kb on + strand, within CA264_04140at 958.671 kb on + strand, within CA264_04140at 958.672 kb on - strand, within CA264_04140at 958.685 kb on + strand, within CA264_04140at 958.685 kb on + strand, within CA264_04140at 958.686 kb on - strand, within CA264_04140at 958.686 kb on - strand, within CA264_04140at 958.738 kb on + strand, within CA264_04140at 958.738 kb on + strand, within CA264_04140at 958.890 kb on + strand, within CA264_04140at 958.891 kb on - strand, within CA264_04140at 958.892 kb on + strand, within CA264_04140at 958.893 kb on - strand, within CA264_04140at 958.896 kb on + strand, within CA264_04140at 958.924 kb on + strand, within CA264_04140at 958.925 kb on - strand, within CA264_04140at 959.083 kb on + strandat 959.084 kb on - strandat 959.094 kb on + strandat 959.094 kb on + strandat 959.123 kb on + strandat 959.141 kb on - strandat 959.158 kb on - strandat 959.160 kb on - strandat 959.160 kb on - strandat 959.276 kb on + strand, within CA264_04145at 959.285 kb on + strand, within CA264_04145at 959.298 kb on - strand, within CA264_04145at 959.298 kb on - strand, within CA264_04145at 959.337 kb on - strand, within CA264_04145at 959.399 kb on - strand, within CA264_04145at 959.431 kb on + strand, within CA264_04145at 959.432 kb on - strand, within CA264_04145at 959.637 kb on + strandat 959.638 kb on - strandat 959.683 kb on + strandat 959.688 kb on - strandat 959.804 kb on + strand, within CA264_04150at 959.876 kb on + strand, within CA264_04150at 959.877 kb on - strand, within CA264_04150at 959.877 kb on - strand, within CA264_04150at 960.047 kb on + strandat 960.047 kb on + strandat 960.078 kb on - strandat 960.081 kb on - strandat 960.125 kb on + strandat 960.125 kb on + strandat 960.126 kb on - strandat 960.193 kb on + strandat 960.217 kb on - strandat 960.217 kb on - strandat 960.266 kb on + strand, within CA264_04155at 960.299 kb on + strand, within CA264_04155at 960.339 kb on + strand, within CA264_04155at 960.339 kb on + strand, within CA264_04155at 960.394 kb on + strand, within CA264_04155at 960.395 kb on - strand, within CA264_04155at 960.439 kb on + strand, within CA264_04155at 960.439 kb on + strand, within CA264_04155at 960.440 kb on - strand, within CA264_04155at 960.440 kb on - strand, within CA264_04155at 960.471 kb on - strand, within CA264_04155

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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958,146 + -0.4
958,147 - -0.1
958,166 - -0.8
958,173 + -0.4
958,174 - -0.4
958,195 + -1.2
958,197 + -1.1
958,211 + -1.2
958,212 - -0.4
958,242 - -0.8
958,255 - +0.6
958,302 - -1.3
958,399 - CA264_04140 0.19 -1.2
958,497 - CA264_04140 0.30 +0.4
958,568 + CA264_04140 0.38 +0.2
958,569 - CA264_04140 0.38 -0.9
958,571 + CA264_04140 0.39 +0.7
958,670 - CA264_04140 0.50 -0.6
958,671 + CA264_04140 0.50 -0.5
958,671 + CA264_04140 0.50 -0.3
958,672 - CA264_04140 0.50 +0.3
958,685 + CA264_04140 0.51 -0.6
958,685 + CA264_04140 0.51 +1.5
958,686 - CA264_04140 0.52 +0.3
958,686 - CA264_04140 0.52 -0.1
958,738 + CA264_04140 0.57 +0.5
958,738 + CA264_04140 0.57 +2.9
958,890 + CA264_04140 0.74 +0.8
958,891 - CA264_04140 0.74 -0.2
958,892 + CA264_04140 0.75 -0.9
958,893 - CA264_04140 0.75 -0.1
958,896 + CA264_04140 0.75 +1.0
958,924 + CA264_04140 0.78 -0.7
958,925 - CA264_04140 0.78 -0.7
959,083 + -0.8
959,084 - +1.2
959,094 + -0.6
959,094 + +0.0
959,123 + +0.4
959,141 - +0.5
959,158 - +0.5
959,160 - -0.6
959,160 - -0.2
959,276 + CA264_04145 0.36 +2.7
959,285 + CA264_04145 0.38 -0.1
959,298 - CA264_04145 0.42 -0.8
959,298 - CA264_04145 0.42 -1.3
959,337 - CA264_04145 0.52 -1.8
959,399 - CA264_04145 0.67 -1.0
959,431 + CA264_04145 0.76 +0.0
959,432 - CA264_04145 0.76 -3.3
959,637 + -2.2
959,638 - -1.0
959,683 + +0.0
959,688 - -1.8
959,804 + CA264_04150 0.37 -0.9
959,876 + CA264_04150 0.62 -0.7
959,877 - CA264_04150 0.62 -1.2
959,877 - CA264_04150 0.62 -0.7
960,047 + -0.7
960,047 + -0.6
960,078 - +0.0
960,081 - -0.8
960,125 + +0.4
960,125 + -0.6
960,126 - +0.3
960,193 + +0.2
960,217 - +1.5
960,217 - -0.0
960,266 + CA264_04155 0.10 -0.2
960,299 + CA264_04155 0.17 -0.1
960,339 + CA264_04155 0.26 +0.7
960,339 + CA264_04155 0.26 -0.4
960,394 + CA264_04155 0.38 -1.5
960,395 - CA264_04155 0.39 +0.1
960,439 + CA264_04155 0.48 -2.4
960,439 + CA264_04155 0.48 -0.4
960,440 - CA264_04155 0.49 -0.9
960,440 - CA264_04155 0.49 -2.1
960,471 - CA264_04155 0.56 -1.3

Or see this region's nucleotide sequence