Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03990 and CA264_03995 are separated by 289 nucleotides CA264_03995 and CA264_04000 are separated by 396 nucleotides
CA264_03990: CA264_03990 - alkyl hydroperoxide reductase, at 925,628 to 926,272
_03990
CA264_03995: CA264_03995 - hypothetical protein, at 926,562 to 926,924
_03995
CA264_04000: CA264_04000 - hypothetical protein, at 927,321 to 928,562
_04000
Position (kb)
926
927 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 925.620 kb on - strand at 925.678 kb on - strand at 925.726 kb on + strand, within CA264_03990 at 925.735 kb on + strand, within CA264_03990 at 925.735 kb on + strand, within CA264_03990 at 925.736 kb on - strand, within CA264_03990 at 925.736 kb on - strand, within CA264_03990 at 925.813 kb on + strand, within CA264_03990 at 925.910 kb on + strand, within CA264_03990 at 925.910 kb on + strand, within CA264_03990 at 925.910 kb on + strand, within CA264_03990 at 925.910 kb on + strand, within CA264_03990 at 925.910 kb on + strand, within CA264_03990 at 925.970 kb on + strand, within CA264_03990 at 926.026 kb on + strand, within CA264_03990 at 926.071 kb on + strand, within CA264_03990 at 926.072 kb on - strand, within CA264_03990 at 926.162 kb on + strand, within CA264_03990 at 926.200 kb on - strand, within CA264_03990 at 926.260 kb on + strand at 926.381 kb on + strand at 926.381 kb on + strand at 926.411 kb on + strand at 926.424 kb on + strand at 926.424 kb on + strand at 926.424 kb on + strand at 926.440 kb on - strand at 926.469 kb on + strand at 926.469 kb on + strand at 926.470 kb on - strand at 926.470 kb on - strand at 926.557 kb on - strand at 926.563 kb on + strand at 926.629 kb on - strand, within CA264_03995 at 926.630 kb on + strand, within CA264_03995 at 926.634 kb on + strand, within CA264_03995 at 926.634 kb on + strand, within CA264_03995 at 926.635 kb on - strand, within CA264_03995 at 926.639 kb on + strand, within CA264_03995 at 926.685 kb on - strand, within CA264_03995 at 926.688 kb on + strand, within CA264_03995 at 926.689 kb on - strand, within CA264_03995 at 926.697 kb on + strand, within CA264_03995 at 926.697 kb on + strand, within CA264_03995 at 926.697 kb on + strand, within CA264_03995 at 926.698 kb on - strand, within CA264_03995 at 926.925 kb on - strand at 926.939 kb on + strand at 926.943 kb on - strand at 927.004 kb on - strand at 927.009 kb on - strand at 927.053 kb on - strand at 927.064 kb on - strand at 927.065 kb on + strand at 927.089 kb on + strand at 927.089 kb on + strand at 927.119 kb on + strand at 927.163 kb on + strand at 927.164 kb on - strand at 927.182 kb on - strand at 927.205 kb on + strand at 927.207 kb on + strand at 927.208 kb on - strand at 927.238 kb on + strand at 927.243 kb on + strand at 927.243 kb on + strand at 927.245 kb on + strand at 927.245 kb on + strand at 927.246 kb on - strand at 927.252 kb on + strand at 927.253 kb on - strand at 927.253 kb on - strand at 927.253 kb on - strand at 927.253 kb on - strand at 927.257 kb on + strand at 927.257 kb on + strand at 927.258 kb on - strand at 927.259 kb on + strand at 927.259 kb on + strand at 927.260 kb on - strand at 927.260 kb on - strand at 927.260 kb on - strand at 927.260 kb on - strand at 927.260 kb on - strand at 927.260 kb on - strand at 927.260 kb on - strand at 927.262 kb on + strand at 927.283 kb on + strand at 927.302 kb on + strand at 927.303 kb on - strand at 927.320 kb on + strand at 927.450 kb on + strand, within CA264_04000 at 927.451 kb on - strand, within CA264_04000 at 927.458 kb on + strand, within CA264_04000 at 927.486 kb on + strand, within CA264_04000 at 927.486 kb on + strand, within CA264_04000 at 927.486 kb on + strand, within CA264_04000 at 927.487 kb on - strand, within CA264_04000 at 927.488 kb on + strand, within CA264_04000 at 927.488 kb on + strand, within CA264_04000 at 927.489 kb on - strand, within CA264_04000 at 927.489 kb on - strand, within CA264_04000 at 927.591 kb on - strand, within CA264_04000 at 927.675 kb on + strand, within CA264_04000 at 927.700 kb on - strand, within CA264_04000 at 927.700 kb on - strand, within CA264_04000 at 927.789 kb on + strand, within CA264_04000 at 927.789 kb on + strand, within CA264_04000 at 927.789 kb on + strand, within CA264_04000 at 927.790 kb on - strand, within CA264_04000 at 927.790 kb on - strand, within CA264_04000 at 927.803 kb on - strand, within CA264_04000 at 927.803 kb on - strand, within CA264_04000
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 925,620 - +0.0 925,678 - +0.0 925,726 + CA264_03990 0.15 -0.2 925,735 + CA264_03990 0.17 -1.6 925,735 + CA264_03990 0.17 +0.1 925,736 - CA264_03990 0.17 +1.8 925,736 - CA264_03990 0.17 +0.1 925,813 + CA264_03990 0.29 -1.0 925,910 + CA264_03990 0.44 -0.0 925,910 + CA264_03990 0.44 -0.2 925,910 + CA264_03990 0.44 -0.2 925,910 + CA264_03990 0.44 +0.1 925,910 + CA264_03990 0.44 +1.0 925,970 + CA264_03990 0.53 +0.2 926,026 + CA264_03990 0.62 -0.3 926,071 + CA264_03990 0.69 +1.0 926,072 - CA264_03990 0.69 +0.0 926,162 + CA264_03990 0.83 +0.6 926,200 - CA264_03990 0.89 +0.5 926,260 + +0.1 926,381 + +1.1 926,381 + +0.3 926,411 + +0.1 926,424 + +0.6 926,424 + +1.3 926,424 + +1.2 926,440 - -0.1 926,469 + +0.7 926,469 + -1.1 926,470 - -1.7 926,470 - +0.3 926,557 - -0.9 926,563 + +0.2 926,629 - CA264_03995 0.18 -0.9 926,630 + CA264_03995 0.19 -0.7 926,634 + CA264_03995 0.20 +0.2 926,634 + CA264_03995 0.20 -1.2 926,635 - CA264_03995 0.20 -0.4 926,639 + CA264_03995 0.21 -0.1 926,685 - CA264_03995 0.34 +0.5 926,688 + CA264_03995 0.35 +0.8 926,689 - CA264_03995 0.35 -0.6 926,697 + CA264_03995 0.37 -0.1 926,697 + CA264_03995 0.37 -1.2 926,697 + CA264_03995 0.37 -0.4 926,698 - CA264_03995 0.37 -0.5 926,925 - +0.7 926,939 + -0.1 926,943 - -0.7 927,004 - +0.1 927,009 - +0.6 927,053 - -0.5 927,064 - +1.5 927,065 + +1.0 927,089 + +0.9 927,089 + -0.8 927,119 + -2.1 927,163 + -1.2 927,164 - -1.0 927,182 - +1.1 927,205 + +0.2 927,207 + +0.3 927,208 - +1.1 927,238 + -0.1 927,243 + +1.3 927,243 + -0.3 927,245 + -1.3 927,245 + -0.8 927,246 - -0.1 927,252 + +1.9 927,253 - +1.5 927,253 - +0.2 927,253 - +1.2 927,253 - -0.0 927,257 + +0.8 927,257 + -2.0 927,258 - -1.2 927,259 + -0.2 927,259 + -0.2 927,260 - -2.1 927,260 - -0.8 927,260 - +0.5 927,260 - -0.3 927,260 - +1.0 927,260 - +0.8 927,260 - +0.1 927,262 + -1.1 927,283 + -1.0 927,302 + -0.1 927,303 - +0.8 927,320 + +0.3 927,450 + CA264_04000 0.10 -0.9 927,451 - CA264_04000 0.10 -1.0 927,458 + CA264_04000 0.11 -0.5 927,486 + CA264_04000 0.13 -0.7 927,486 + CA264_04000 0.13 +0.4 927,486 + CA264_04000 0.13 -0.3 927,487 - CA264_04000 0.13 -0.4 927,488 + CA264_04000 0.13 -0.6 927,488 + CA264_04000 0.13 +0.2 927,489 - CA264_04000 0.14 -0.4 927,489 - CA264_04000 0.14 +0.3 927,591 - CA264_04000 0.22 +0.2 927,675 + CA264_04000 0.29 +0.2 927,700 - CA264_04000 0.31 -0.8 927,700 - CA264_04000 0.31 +0.3 927,789 + CA264_04000 0.38 -0.8 927,789 + CA264_04000 0.38 +0.4 927,789 + CA264_04000 0.38 -0.5 927,790 - CA264_04000 0.38 -0.0 927,790 - CA264_04000 0.38 +0.3 927,803 - CA264_04000 0.39 -1.2 927,803 - CA264_04000 0.39 +0.3
Or see this region's nucleotide sequence