Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03975

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03965 and CA264_03970 are separated by 178 nucleotidesCA264_03970 and CA264_03975 are separated by 172 nucleotidesCA264_03975 and CA264_03980 are separated by 25 nucleotides CA264_03965: CA264_03965 - hypothetical protein, at 919,208 to 919,765 _03965 CA264_03970: CA264_03970 - hypothetical protein, at 919,944 to 920,564 _03970 CA264_03975: CA264_03975 - hypothetical protein, at 920,737 to 921,765 _03975 CA264_03980: CA264_03980 - hypothetical protein, at 921,791 to 924,523 _03980 Position (kb) 920 921 922Strain fitness (log2 ratio) -2 -1 0 1 2at 919.746 kb on + strandat 919.756 kb on - strandat 919.769 kb on + strandat 919.769 kb on + strandat 919.769 kb on + strandat 919.788 kb on - strandat 919.789 kb on + strandat 919.790 kb on - strandat 920.052 kb on + strand, within CA264_03970at 920.053 kb on - strand, within CA264_03970at 920.053 kb on - strand, within CA264_03970at 920.059 kb on - strand, within CA264_03970at 920.255 kb on + strand, within CA264_03970at 920.255 kb on + strand, within CA264_03970at 920.256 kb on - strand, within CA264_03970at 920.256 kb on - strand, within CA264_03970at 920.259 kb on + strand, within CA264_03970at 920.261 kb on + strand, within CA264_03970at 920.455 kb on - strand, within CA264_03970at 920.463 kb on - strand, within CA264_03970at 920.471 kb on - strand, within CA264_03970at 920.514 kb on - strandat 920.514 kb on - strandat 920.563 kb on - strandat 920.598 kb on + strandat 920.598 kb on + strandat 920.602 kb on + strandat 920.602 kb on + strandat 920.603 kb on - strandat 920.603 kb on - strandat 920.657 kb on - strandat 920.759 kb on - strandat 920.855 kb on + strand, within CA264_03975at 920.881 kb on + strand, within CA264_03975at 921.083 kb on - strand, within CA264_03975at 921.088 kb on + strand, within CA264_03975at 921.106 kb on - strand, within CA264_03975at 921.106 kb on - strand, within CA264_03975at 921.106 kb on - strand, within CA264_03975at 921.139 kb on - strand, within CA264_03975at 921.180 kb on + strand, within CA264_03975at 921.358 kb on - strand, within CA264_03975at 921.472 kb on + strand, within CA264_03975at 921.489 kb on + strand, within CA264_03975at 921.578 kb on + strand, within CA264_03975at 921.578 kb on + strand, within CA264_03975at 921.578 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.582 kb on + strand, within CA264_03975at 921.583 kb on - strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.601 kb on + strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.602 kb on - strand, within CA264_03975at 921.787 kb on - strandat 921.787 kb on - strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.846 kb on + strandat 921.847 kb on - strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.850 kb on + strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.851 kb on - strandat 921.913 kb on + strandat 921.914 kb on - strandat 921.965 kb on - strandat 921.971 kb on - strandat 921.975 kb on - strandat 922.010 kb on + strandat 922.010 kb on + strandat 922.010 kb on + strandat 922.011 kb on - strandat 922.011 kb on - strandat 922.206 kb on + strand, within CA264_03980at 922.320 kb on - strand, within CA264_03980at 922.322 kb on + strand, within CA264_03980at 922.322 kb on + strand, within CA264_03980at 922.323 kb on - strand, within CA264_03980at 922.352 kb on + strand, within CA264_03980at 922.365 kb on + strand, within CA264_03980at 922.370 kb on + strand, within CA264_03980at 922.371 kb on - strand, within CA264_03980at 922.371 kb on - strand, within CA264_03980at 922.379 kb on + strand, within CA264_03980at 922.380 kb on - strand, within CA264_03980at 922.380 kb on - strand, within CA264_03980at 922.402 kb on - strand, within CA264_03980at 922.406 kb on - strand, within CA264_03980at 922.453 kb on + strand, within CA264_03980at 922.453 kb on + strand, within CA264_03980at 922.463 kb on - strand, within CA264_03980at 922.763 kb on + strand, within CA264_03980

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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919,746 + +0.2
919,756 - +0.5
919,769 + +0.6
919,769 + -0.1
919,769 + +0.4
919,788 - +0.2
919,789 + +0.2
919,790 - +0.7
920,052 + CA264_03970 0.17 -0.6
920,053 - CA264_03970 0.18 -0.5
920,053 - CA264_03970 0.18 +0.6
920,059 - CA264_03970 0.19 -1.2
920,255 + CA264_03970 0.50 +0.4
920,255 + CA264_03970 0.50 -0.9
920,256 - CA264_03970 0.50 -0.6
920,256 - CA264_03970 0.50 +0.2
920,259 + CA264_03970 0.51 +0.0
920,261 + CA264_03970 0.51 -0.4
920,455 - CA264_03970 0.82 -0.3
920,463 - CA264_03970 0.84 -0.9
920,471 - CA264_03970 0.85 +0.6
920,514 - -0.6
920,514 - -0.4
920,563 - -0.2
920,598 + -2.2
920,598 + +0.1
920,602 + +0.2
920,602 + -0.1
920,603 - -0.4
920,603 - +0.6
920,657 - -0.6
920,759 - -0.4
920,855 + CA264_03975 0.11 -0.7
920,881 + CA264_03975 0.14 -1.8
921,083 - CA264_03975 0.34 +0.1
921,088 + CA264_03975 0.34 -0.6
921,106 - CA264_03975 0.36 -1.1
921,106 - CA264_03975 0.36 +0.5
921,106 - CA264_03975 0.36 +0.2
921,139 - CA264_03975 0.39 +1.7
921,180 + CA264_03975 0.43 +0.4
921,358 - CA264_03975 0.60 -0.3
921,472 + CA264_03975 0.71 -0.9
921,489 + CA264_03975 0.73 -0.5
921,578 + CA264_03975 0.82 -1.6
921,578 + CA264_03975 0.82 -0.4
921,578 + CA264_03975 0.82 +0.6
921,582 + CA264_03975 0.82 +0.8
921,582 + CA264_03975 0.82 +0.6
921,582 + CA264_03975 0.82 -2.0
921,582 + CA264_03975 0.82 -0.3
921,583 - CA264_03975 0.82 +1.8
921,601 + CA264_03975 0.84 +0.7
921,601 + CA264_03975 0.84 +0.6
921,601 + CA264_03975 0.84 -0.1
921,601 + CA264_03975 0.84 -0.1
921,602 - CA264_03975 0.84 -0.4
921,602 - CA264_03975 0.84 +0.6
921,602 - CA264_03975 0.84 -0.5
921,602 - CA264_03975 0.84 +2.2
921,602 - CA264_03975 0.84 -0.7
921,602 - CA264_03975 0.84 -0.1
921,787 - -0.2
921,787 - +0.6
921,846 + +0.9
921,846 + -0.0
921,846 + -2.2
921,846 + -0.6
921,846 + +0.2
921,846 + -0.4
921,847 - -2.2
921,850 + -0.9
921,850 + +1.3
921,850 + -0.9
921,850 + -0.2
921,850 + -0.8
921,850 + -1.0
921,851 - -0.8
921,851 - -0.1
921,851 - +1.6
921,851 - -0.1
921,851 - -0.4
921,851 - +0.5
921,851 - -0.7
921,851 - +0.1
921,851 - -1.6
921,851 - -1.7
921,913 + +0.2
921,914 - +0.4
921,965 - -0.6
921,971 - -0.3
921,975 - -2.2
922,010 + +0.3
922,010 + -0.6
922,010 + -0.9
922,011 - +0.4
922,011 - -1.6
922,206 + CA264_03980 0.15 -0.4
922,320 - CA264_03980 0.19 -0.3
922,322 + CA264_03980 0.19 -0.6
922,322 + CA264_03980 0.19 +0.1
922,323 - CA264_03980 0.19 -0.2
922,352 + CA264_03980 0.21 -1.1
922,365 + CA264_03980 0.21 -0.9
922,370 + CA264_03980 0.21 +0.4
922,371 - CA264_03980 0.21 -0.9
922,371 - CA264_03980 0.21 -0.5
922,379 + CA264_03980 0.22 -0.5
922,380 - CA264_03980 0.22 +0.9
922,380 - CA264_03980 0.22 +1.8
922,402 - CA264_03980 0.22 +1.2
922,406 - CA264_03980 0.23 -0.2
922,453 + CA264_03980 0.24 +0.5
922,453 + CA264_03980 0.24 -0.9
922,463 - CA264_03980 0.25 -0.5
922,763 + CA264_03980 0.36 -0.7

Or see this region's nucleotide sequence