Experiment: m.b. Lomefloxacin 0.004 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02970 and CA264_02975 are separated by 57 nucleotides CA264_02975 and CA264_02980 are separated by 12 nucleotides CA264_02980 and CA264_02985 are separated by 44 nucleotides
CA264_02970: CA264_02970 - glucose-1-phosphate cytidylyltransferase, at 681,862 to 682,665
_02970
CA264_02975: CA264_02975 - NAD-dependent epimerase, at 682,723 to 683,808
_02975
CA264_02980: CA264_02980 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 683,821 to 684,384
_02980
CA264_02985: CA264_02985 - NAD(P)-dependent oxidoreductase, at 684,429 to 685,790
_02985
Position (kb) 682
683
684 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 681.746 kb on + strand at 681.846 kb on + strand at 681.854 kb on + strand at 681.858 kb on - strand at 681.859 kb on + strand at 681.860 kb on - strand at 681.874 kb on - strand at 681.875 kb on + strand at 681.875 kb on + strand at 681.875 kb on + strand at 681.980 kb on + strand, within CA264_02970 at 681.980 kb on + strand, within CA264_02970 at 681.981 kb on - strand, within CA264_02970 at 681.983 kb on - strand, within CA264_02970 at 681.983 kb on - strand, within CA264_02970 at 681.992 kb on - strand, within CA264_02970 at 681.992 kb on - strand, within CA264_02970 at 682.070 kb on - strand, within CA264_02970 at 682.221 kb on + strand, within CA264_02970 at 682.462 kb on + strand, within CA264_02970 at 682.463 kb on - strand, within CA264_02970 at 682.664 kb on - strand at 682.664 kb on - strand at 682.703 kb on + strand at 682.703 kb on + strand at 682.706 kb on + strand at 682.706 kb on + strand at 682.707 kb on - strand at 682.708 kb on + strand at 682.708 kb on + strand at 682.708 kb on + strand at 682.710 kb on + strand at 682.711 kb on - strand at 682.711 kb on - strand at 682.711 kb on - strand at 682.811 kb on + strand at 682.811 kb on + strand at 682.812 kb on - strand at 683.009 kb on + strand, within CA264_02975 at 683.014 kb on + strand, within CA264_02975 at 683.015 kb on - strand, within CA264_02975 at 683.015 kb on - strand, within CA264_02975 at 683.017 kb on - strand, within CA264_02975 at 683.047 kb on - strand, within CA264_02975 at 683.095 kb on + strand, within CA264_02975 at 683.095 kb on + strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.096 kb on - strand, within CA264_02975 at 683.367 kb on - strand, within CA264_02975 at 683.400 kb on + strand, within CA264_02975 at 683.401 kb on - strand, within CA264_02975 at 683.501 kb on + strand, within CA264_02975 at 683.502 kb on - strand, within CA264_02975 at 683.557 kb on + strand, within CA264_02975 at 683.557 kb on + strand, within CA264_02975 at 683.558 kb on - strand, within CA264_02975 at 683.565 kb on - strand, within CA264_02975 at 683.580 kb on + strand, within CA264_02975 at 683.612 kb on - strand, within CA264_02975 at 683.686 kb on - strand, within CA264_02975 at 683.686 kb on - strand, within CA264_02975 at 683.736 kb on + strand at 683.736 kb on + strand at 683.736 kb on + strand at 683.737 kb on - strand at 683.807 kb on - strand at 683.811 kb on - strand at 683.812 kb on + strand at 683.868 kb on - strand at 683.967 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 683.972 kb on - strand, within CA264_02980 at 684.064 kb on + strand, within CA264_02980 at 684.064 kb on + strand, within CA264_02980 at 684.065 kb on - strand, within CA264_02980 at 684.138 kb on + strand, within CA264_02980 at 684.139 kb on - strand, within CA264_02980 at 684.215 kb on - strand, within CA264_02980 at 684.215 kb on - strand, within CA264_02980 at 684.232 kb on + strand, within CA264_02980 at 684.233 kb on - strand, within CA264_02980 at 684.419 kb on - strand at 684.421 kb on - strand at 684.434 kb on - strand at 684.436 kb on + strand at 684.474 kb on - strand at 684.539 kb on + strand at 684.539 kb on + strand at 684.540 kb on - strand at 684.544 kb on - strand at 684.544 kb on - strand at 684.607 kb on - strand, within CA264_02985 at 684.681 kb on - strand, within CA264_02985 at 684.749 kb on + strand, within CA264_02985 at 684.778 kb on + strand, within CA264_02985
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM remove 681,746 + -0.1 681,846 + -0.8 681,854 + +0.8 681,858 - +0.7 681,859 + -0.3 681,860 - -1.1 681,874 - +0.4 681,875 + -0.3 681,875 + -0.1 681,875 + -0.0 681,980 + CA264_02970 0.15 +0.7 681,980 + CA264_02970 0.15 -2.7 681,981 - CA264_02970 0.15 -0.9 681,983 - CA264_02970 0.15 +0.0 681,983 - CA264_02970 0.15 -0.8 681,992 - CA264_02970 0.16 -1.4 681,992 - CA264_02970 0.16 +0.1 682,070 - CA264_02970 0.26 -0.5 682,221 + CA264_02970 0.45 -0.7 682,462 + CA264_02970 0.75 -1.0 682,463 - CA264_02970 0.75 +0.3 682,664 - +0.9 682,664 - +0.2 682,703 + -0.7 682,703 + -0.9 682,706 + -0.1 682,706 + -0.3 682,707 - +0.9 682,708 + -0.1 682,708 + -0.5 682,708 + -0.8 682,710 + -1.0 682,711 - -1.1 682,711 - -0.3 682,711 - -0.0 682,811 + -0.9 682,811 + -1.4 682,812 - -0.5 683,009 + CA264_02975 0.26 +0.6 683,014 + CA264_02975 0.27 -0.1 683,015 - CA264_02975 0.27 -1.5 683,015 - CA264_02975 0.27 -0.2 683,017 - CA264_02975 0.27 -0.8 683,047 - CA264_02975 0.30 -1.2 683,095 + CA264_02975 0.34 +0.4 683,095 + CA264_02975 0.34 -0.0 683,096 - CA264_02975 0.34 -0.0 683,096 - CA264_02975 0.34 -0.0 683,096 - CA264_02975 0.34 -0.4 683,096 - CA264_02975 0.34 +0.1 683,367 - CA264_02975 0.59 -0.3 683,400 + CA264_02975 0.62 +0.2 683,401 - CA264_02975 0.62 -0.5 683,501 + CA264_02975 0.72 -1.1 683,502 - CA264_02975 0.72 -1.7 683,557 + CA264_02975 0.77 -0.0 683,557 + CA264_02975 0.77 -0.6 683,558 - CA264_02975 0.77 -0.1 683,565 - CA264_02975 0.78 -0.5 683,580 + CA264_02975 0.79 +0.9 683,612 - CA264_02975 0.82 +0.9 683,686 - CA264_02975 0.89 +0.6 683,686 - CA264_02975 0.89 -0.9 683,736 + -1.4 683,736 + +2.0 683,736 + -0.7 683,737 - +2.0 683,807 - -2.1 683,811 - -0.0 683,812 + -0.7 683,868 - -1.2 683,967 - CA264_02980 0.26 -0.7 683,972 - CA264_02980 0.27 +0.7 683,972 - CA264_02980 0.27 -0.3 683,972 - CA264_02980 0.27 -0.2 683,972 - CA264_02980 0.27 -0.6 684,064 + CA264_02980 0.43 +0.2 684,064 + CA264_02980 0.43 -2.8 684,065 - CA264_02980 0.43 +0.3 684,138 + CA264_02980 0.56 -0.6 684,139 - CA264_02980 0.56 +0.4 684,215 - CA264_02980 0.70 +0.4 684,215 - CA264_02980 0.70 -0.7 684,232 + CA264_02980 0.73 +0.4 684,233 - CA264_02980 0.73 -1.6 684,419 - -2.1 684,421 - -0.9 684,434 - -0.1 684,436 + -0.0 684,474 - -0.0 684,539 + -1.8 684,539 + +0.5 684,540 - -1.4 684,544 - +0.1 684,544 - -1.2 684,607 - CA264_02985 0.13 -0.9 684,681 - CA264_02985 0.19 -0.8 684,749 + CA264_02985 0.23 -0.6 684,778 + CA264_02985 0.26 -0.3
Or see this region's nucleotide sequence