Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02900

Experiment: m.b. Lomefloxacin 0.004 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02895 and CA264_02900 are separated by 32 nucleotidesCA264_02900 and CA264_02905 are separated by 90 nucleotides CA264_02895: CA264_02895 - alpha/beta hydrolase, at 660,679 to 661,674 _02895 CA264_02900: CA264_02900 - hypothetical protein, at 661,707 to 661,934 _02900 CA264_02905: CA264_02905 - hypothetical protein, at 662,025 to 662,831 _02905 Position (kb) 661 662Strain fitness (log2 ratio) -2 -1 0 1 2at 660.720 kb on - strandat 660.844 kb on + strand, within CA264_02895at 660.844 kb on + strand, within CA264_02895at 660.845 kb on - strand, within CA264_02895at 660.926 kb on - strand, within CA264_02895at 660.990 kb on - strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.020 kb on - strand, within CA264_02895at 661.020 kb on - strand, within CA264_02895at 661.021 kb on + strand, within CA264_02895at 661.021 kb on + strand, within CA264_02895at 661.022 kb on - strand, within CA264_02895at 661.024 kb on + strand, within CA264_02895at 661.024 kb on + strand, within CA264_02895at 661.126 kb on - strand, within CA264_02895at 661.199 kb on - strand, within CA264_02895at 661.216 kb on + strand, within CA264_02895at 661.217 kb on - strand, within CA264_02895at 661.237 kb on + strand, within CA264_02895at 661.237 kb on + strand, within CA264_02895at 661.291 kb on + strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.426 kb on + strand, within CA264_02895at 661.442 kb on + strand, within CA264_02895at 661.443 kb on - strand, within CA264_02895at 661.467 kb on - strand, within CA264_02895at 661.502 kb on - strand, within CA264_02895at 661.503 kb on + strand, within CA264_02895at 661.505 kb on + strand, within CA264_02895at 661.505 kb on + strand, within CA264_02895at 661.506 kb on - strand, within CA264_02895at 661.506 kb on - strand, within CA264_02895at 661.506 kb on - strand, within CA264_02895at 661.550 kb on + strand, within CA264_02895at 661.615 kb on - strandat 661.615 kb on - strandat 661.615 kb on - strandat 661.616 kb on + strandat 661.617 kb on - strandat 661.617 kb on - strandat 661.807 kb on + strand, within CA264_02900at 661.808 kb on - strand, within CA264_02900at 661.808 kb on - strand, within CA264_02900at 661.874 kb on + strand, within CA264_02900at 661.875 kb on - strand, within CA264_02900at 661.916 kb on - strandat 661.918 kb on - strandat 661.943 kb on - strandat 661.944 kb on + strandat 661.975 kb on + strandat 662.002 kb on + strandat 662.002 kb on + strandat 662.002 kb on + strandat 662.003 kb on - strandat 662.019 kb on - strandat 662.085 kb on + strandat 662.085 kb on + strandat 662.086 kb on - strandat 662.086 kb on - strandat 662.086 kb on - strandat 662.087 kb on + strandat 662.087 kb on + strandat 662.087 kb on + strandat 662.087 kb on + strandat 662.088 kb on - strandat 662.088 kb on - strandat 662.093 kb on + strandat 662.094 kb on - strandat 662.196 kb on + strand, within CA264_02905at 662.197 kb on - strand, within CA264_02905at 662.197 kb on - strand, within CA264_02905at 662.197 kb on - strand, within CA264_02905at 662.236 kb on + strand, within CA264_02905at 662.241 kb on + strand, within CA264_02905at 662.242 kb on - strand, within CA264_02905at 662.355 kb on + strand, within CA264_02905at 662.356 kb on - strand, within CA264_02905at 662.356 kb on - strand, within CA264_02905at 662.357 kb on + strand, within CA264_02905at 662.357 kb on + strand, within CA264_02905at 662.444 kb on + strand, within CA264_02905at 662.648 kb on + strand, within CA264_02905at 662.694 kb on - strand, within CA264_02905at 662.701 kb on - strand, within CA264_02905at 662.701 kb on - strand, within CA264_02905at 662.701 kb on - strand, within CA264_02905at 662.732 kb on + strand, within CA264_02905at 662.732 kb on + strand, within CA264_02905at 662.732 kb on + strand, within CA264_02905at 662.732 kb on + strand, within CA264_02905at 662.733 kb on - strand, within CA264_02905at 662.733 kb on - strand, within CA264_02905at 662.733 kb on - strand, within CA264_02905at 662.733 kb on - strand, within CA264_02905at 662.735 kb on - strand, within CA264_02905at 662.742 kb on + strand, within CA264_02905at 662.743 kb on - strand, within CA264_02905at 662.743 kb on - strand, within CA264_02905at 662.796 kb on + strandat 662.796 kb on + strandat 662.797 kb on - strandat 662.797 kb on - strandat 662.803 kb on - strandat 662.823 kb on - strandat 662.865 kb on - strandat 662.902 kb on + strandat 662.903 kb on - strandat 662.918 kb on + strandat 662.919 kb on - strandat 662.919 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
remove
660,720 - -0.6
660,844 + CA264_02895 0.17 -1.6
660,844 + CA264_02895 0.17 +1.4
660,845 - CA264_02895 0.17 -1.3
660,926 - CA264_02895 0.25 +0.2
660,990 - CA264_02895 0.31 -2.1
661,019 + CA264_02895 0.34 -0.6
661,019 + CA264_02895 0.34 -0.7
661,019 + CA264_02895 0.34 -2.0
661,020 - CA264_02895 0.34 +0.9
661,020 - CA264_02895 0.34 +1.6
661,021 + CA264_02895 0.34 -1.8
661,021 + CA264_02895 0.34 +0.2
661,022 - CA264_02895 0.34 +2.4
661,024 + CA264_02895 0.35 -0.6
661,024 + CA264_02895 0.35 +0.9
661,126 - CA264_02895 0.45 -1.0
661,199 - CA264_02895 0.52 -2.2
661,216 + CA264_02895 0.54 +0.8
661,217 - CA264_02895 0.54 +0.1
661,237 + CA264_02895 0.56 +0.0
661,237 + CA264_02895 0.56 +1.0
661,291 + CA264_02895 0.61 +0.4
661,295 - CA264_02895 0.62 +0.7
661,295 - CA264_02895 0.62 +0.7
661,295 - CA264_02895 0.62 -0.5
661,396 + CA264_02895 0.72 -0.4
661,396 + CA264_02895 0.72 +0.4
661,396 + CA264_02895 0.72 -1.2
661,426 + CA264_02895 0.75 -0.6
661,442 + CA264_02895 0.77 -0.7
661,443 - CA264_02895 0.77 -0.7
661,467 - CA264_02895 0.79 -1.1
661,502 - CA264_02895 0.83 +0.4
661,503 + CA264_02895 0.83 -0.7
661,505 + CA264_02895 0.83 -0.2
661,505 + CA264_02895 0.83 -0.5
661,506 - CA264_02895 0.83 -0.5
661,506 - CA264_02895 0.83 +0.3
661,506 - CA264_02895 0.83 -0.1
661,550 + CA264_02895 0.87 +0.1
661,615 - -0.2
661,615 - +0.1
661,615 - -0.7
661,616 + -0.8
661,617 - +0.1
661,617 - +0.0
661,807 + CA264_02900 0.44 -1.2
661,808 - CA264_02900 0.44 -0.5
661,808 - CA264_02900 0.44 -0.6
661,874 + CA264_02900 0.73 -0.9
661,875 - CA264_02900 0.74 +0.6
661,916 - -0.6
661,918 - -0.2
661,943 - -0.1
661,944 + -0.8
661,975 + +0.3
662,002 + -0.7
662,002 + -0.5
662,002 + +0.5
662,003 - +1.1
662,019 - +0.4
662,085 + -0.4
662,085 + -1.2
662,086 - -0.0
662,086 - -0.5
662,086 - -0.6
662,087 + +1.2
662,087 + +0.4
662,087 + -1.7
662,087 + -0.8
662,088 - +0.4
662,088 - +0.8
662,093 + -0.4
662,094 - +0.1
662,196 + CA264_02905 0.21 +0.1
662,197 - CA264_02905 0.21 -0.4
662,197 - CA264_02905 0.21 -0.7
662,197 - CA264_02905 0.21 -0.0
662,236 + CA264_02905 0.26 -0.3
662,241 + CA264_02905 0.27 -0.0
662,242 - CA264_02905 0.27 +0.6
662,355 + CA264_02905 0.41 -2.3
662,356 - CA264_02905 0.41 -1.0
662,356 - CA264_02905 0.41 +0.2
662,357 + CA264_02905 0.41 +0.4
662,357 + CA264_02905 0.41 +2.3
662,444 + CA264_02905 0.52 +0.6
662,648 + CA264_02905 0.77 +1.0
662,694 - CA264_02905 0.83 +0.0
662,701 - CA264_02905 0.84 -0.2
662,701 - CA264_02905 0.84 -0.1
662,701 - CA264_02905 0.84 +0.6
662,732 + CA264_02905 0.88 +0.5
662,732 + CA264_02905 0.88 +0.5
662,732 + CA264_02905 0.88 -1.0
662,732 + CA264_02905 0.88 +0.4
662,733 - CA264_02905 0.88 -1.0
662,733 - CA264_02905 0.88 -0.4
662,733 - CA264_02905 0.88 +0.1
662,733 - CA264_02905 0.88 -0.9
662,735 - CA264_02905 0.88 +0.8
662,742 + CA264_02905 0.89 -2.5
662,743 - CA264_02905 0.89 -1.1
662,743 - CA264_02905 0.89 -0.3
662,796 + -2.1
662,796 + +0.4
662,797 - -0.8
662,797 - -0.4
662,803 - -0.6
662,823 - +0.1
662,865 - -2.0
662,902 + +0.5
662,903 - -0.2
662,918 + -0.7
662,919 - -0.5
662,919 - -0.3

Or see this region's nucleotide sequence