Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01945

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01940 and CA264_01945 are separated by 146 nucleotidesCA264_01945 and CA264_01950 are separated by 97 nucleotides CA264_01940: CA264_01940 - antibiotic biosynthesis monooxygenase, at 450,511 to 450,801 _01940 CA264_01945: CA264_01945 - hypothetical protein, at 450,948 to 451,724 _01945 CA264_01950: CA264_01950 - PhoH family protein, at 451,822 to 452,859 _01950 Position (kb) 450 451 452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 450.057 kb on - strandat 450.074 kb on + strandat 450.081 kb on - strandat 450.081 kb on - strandat 450.081 kb on - strandat 450.084 kb on + strandat 450.111 kb on + strandat 450.112 kb on - strandat 450.112 kb on - strandat 450.151 kb on + strandat 450.152 kb on - strandat 450.185 kb on + strandat 450.185 kb on + strandat 450.330 kb on - strandat 450.350 kb on + strandat 450.351 kb on - strandat 450.389 kb on - strandat 450.391 kb on - strandat 450.439 kb on + strandat 450.512 kb on + strandat 450.580 kb on + strand, within CA264_01940at 450.581 kb on - strand, within CA264_01940at 450.644 kb on + strand, within CA264_01940at 450.654 kb on - strand, within CA264_01940at 450.771 kb on + strand, within CA264_01940at 450.802 kb on - strandat 450.810 kb on + strandat 450.811 kb on - strandat 450.867 kb on + strandat 450.868 kb on - strandat 450.900 kb on + strandat 450.901 kb on - strandat 450.910 kb on + strandat 450.911 kb on - strandat 451.057 kb on + strand, within CA264_01945at 451.402 kb on - strand, within CA264_01945at 451.421 kb on - strand, within CA264_01945at 451.462 kb on + strand, within CA264_01945at 451.490 kb on - strand, within CA264_01945at 451.502 kb on + strand, within CA264_01945at 451.577 kb on - strand, within CA264_01945at 451.597 kb on + strand, within CA264_01945at 451.689 kb on - strandat 451.717 kb on - strandat 451.717 kb on - strandat 451.728 kb on - strandat 451.735 kb on - strandat 451.800 kb on + strandat 451.807 kb on + strandat 451.851 kb on + strandat 451.851 kb on + strandat 451.851 kb on + strandat 451.851 kb on + strandat 451.854 kb on - strandat 451.929 kb on + strand, within CA264_01950at 451.929 kb on + strand, within CA264_01950at 451.929 kb on + strand, within CA264_01950at 451.929 kb on + strand, within CA264_01950at 451.942 kb on - strand, within CA264_01950at 452.022 kb on + strand, within CA264_01950at 452.023 kb on - strand, within CA264_01950at 452.037 kb on + strand, within CA264_01950at 452.043 kb on + strand, within CA264_01950at 452.044 kb on - strand, within CA264_01950at 452.051 kb on + strand, within CA264_01950at 452.051 kb on + strand, within CA264_01950at 452.055 kb on + strand, within CA264_01950at 452.055 kb on + strand, within CA264_01950at 452.056 kb on - strand, within CA264_01950at 452.060 kb on - strand, within CA264_01950at 452.142 kb on + strand, within CA264_01950at 452.300 kb on + strand, within CA264_01950at 452.390 kb on - strand, within CA264_01950at 452.431 kb on + strand, within CA264_01950at 452.435 kb on - strand, within CA264_01950at 452.473 kb on + strand, within CA264_01950

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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450,057 - -0.9
450,074 + -0.8
450,081 - -1.3
450,081 - -0.4
450,081 - -0.9
450,084 + -1.2
450,111 + -1.1
450,112 - -0.2
450,112 - -0.2
450,151 + +0.3
450,152 - -1.2
450,185 + +0.4
450,185 + -2.4
450,330 - -1.0
450,350 + -1.6
450,351 - -1.2
450,389 - -1.5
450,391 - +0.0
450,439 + +0.1
450,512 + +1.0
450,580 + CA264_01940 0.24 -0.6
450,581 - CA264_01940 0.24 +1.3
450,644 + CA264_01940 0.46 -1.6
450,654 - CA264_01940 0.49 -0.2
450,771 + CA264_01940 0.89 -0.4
450,802 - -0.7
450,810 + -0.5
450,811 - -0.8
450,867 + -1.0
450,868 - -0.4
450,900 + -0.2
450,901 - -0.6
450,910 + -1.8
450,911 - -0.7
451,057 + CA264_01945 0.14 -0.4
451,402 - CA264_01945 0.58 -0.4
451,421 - CA264_01945 0.61 -0.3
451,462 + CA264_01945 0.66 +1.0
451,490 - CA264_01945 0.70 +0.8
451,502 + CA264_01945 0.71 -1.1
451,577 - CA264_01945 0.81 +0.2
451,597 + CA264_01945 0.84 -0.7
451,689 - -3.1
451,717 - +0.3
451,717 - -0.3
451,728 - -0.4
451,735 - -0.5
451,800 + -0.5
451,807 + -1.0
451,851 + -1.5
451,851 + +0.6
451,851 + -0.4
451,851 + -0.3
451,854 - -0.2
451,929 + CA264_01950 0.10 -0.6
451,929 + CA264_01950 0.10 -0.1
451,929 + CA264_01950 0.10 -2.4
451,929 + CA264_01950 0.10 -0.6
451,942 - CA264_01950 0.12 -1.8
452,022 + CA264_01950 0.19 -0.8
452,023 - CA264_01950 0.19 -0.2
452,037 + CA264_01950 0.21 -0.5
452,043 + CA264_01950 0.21 -1.4
452,044 - CA264_01950 0.21 -0.8
452,051 + CA264_01950 0.22 -0.4
452,051 + CA264_01950 0.22 -0.7
452,055 + CA264_01950 0.22 -1.5
452,055 + CA264_01950 0.22 +0.0
452,056 - CA264_01950 0.23 +0.0
452,060 - CA264_01950 0.23 +3.0
452,142 + CA264_01950 0.31 -0.6
452,300 + CA264_01950 0.46 +0.0
452,390 - CA264_01950 0.55 -0.7
452,431 + CA264_01950 0.59 +0.2
452,435 - CA264_01950 0.59 +0.9
452,473 + CA264_01950 0.63 -0.9

Or see this region's nucleotide sequence