Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01075

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01065 and CA264_01070 are separated by 39 nucleotidesCA264_01070 and CA264_01075 are separated by 95 nucleotidesCA264_01075 and CA264_01080 are separated by 120 nucleotides CA264_01065: CA264_01065 - MarR family transcriptional regulator, at 234,898 to 235,347 _01065 CA264_01070: CA264_01070 - lipid-binding protein, at 235,387 to 236,046 _01070 CA264_01075: CA264_01075 - lipid-binding protein, at 236,142 to 236,807 _01075 CA264_01080: CA264_01080 - hypothetical protein, at 236,928 to 237,689 _01080 Position (kb) 236 237Strain fitness (log2 ratio) -2 -1 0 1at 235.356 kb on + strandat 235.356 kb on + strandat 235.359 kb on - strandat 235.359 kb on - strandat 235.374 kb on + strandat 235.380 kb on - strandat 235.380 kb on - strandat 235.442 kb on - strandat 235.482 kb on + strand, within CA264_01070at 235.482 kb on + strand, within CA264_01070at 235.482 kb on + strand, within CA264_01070at 235.483 kb on - strand, within CA264_01070at 235.516 kb on + strand, within CA264_01070at 235.516 kb on + strand, within CA264_01070at 235.519 kb on - strand, within CA264_01070at 235.523 kb on + strand, within CA264_01070at 235.524 kb on - strand, within CA264_01070at 235.697 kb on - strand, within CA264_01070at 235.830 kb on - strand, within CA264_01070at 235.932 kb on - strand, within CA264_01070at 235.932 kb on - strand, within CA264_01070at 235.942 kb on - strand, within CA264_01070at 236.123 kb on - strandat 236.128 kb on + strandat 236.128 kb on + strandat 236.129 kb on - strandat 236.130 kb on + strandat 236.130 kb on + strandat 236.423 kb on + strand, within CA264_01075at 236.424 kb on - strand, within CA264_01075at 236.424 kb on - strand, within CA264_01075at 236.424 kb on - strand, within CA264_01075at 236.424 kb on - strand, within CA264_01075at 236.536 kb on + strand, within CA264_01075at 236.579 kb on + strand, within CA264_01075at 236.579 kb on + strand, within CA264_01075at 236.580 kb on - strand, within CA264_01075at 236.583 kb on + strand, within CA264_01075at 236.583 kb on + strand, within CA264_01075at 236.585 kb on + strand, within CA264_01075at 236.686 kb on + strand, within CA264_01075at 236.687 kb on - strand, within CA264_01075at 236.687 kb on - strand, within CA264_01075at 236.810 kb on + strandat 236.811 kb on - strandat 236.820 kb on - strandat 236.821 kb on + strandat 236.821 kb on + strandat 236.821 kb on + strandat 236.821 kb on + strandat 236.822 kb on - strandat 236.904 kb on + strandat 236.904 kb on + strandat 236.904 kb on + strandat 236.909 kb on + strandat 236.917 kb on - strandat 237.139 kb on + strand, within CA264_01080at 237.207 kb on - strand, within CA264_01080at 237.216 kb on - strand, within CA264_01080at 237.216 kb on - strand, within CA264_01080at 237.218 kb on - strand, within CA264_01080at 237.233 kb on - strand, within CA264_01080at 237.233 kb on - strand, within CA264_01080at 237.233 kb on - strand, within CA264_01080at 237.263 kb on + strand, within CA264_01080at 237.264 kb on - strand, within CA264_01080at 237.274 kb on + strand, within CA264_01080at 237.288 kb on + strand, within CA264_01080at 237.288 kb on + strand, within CA264_01080at 237.288 kb on + strand, within CA264_01080at 237.289 kb on - strand, within CA264_01080at 237.340 kb on - strand, within CA264_01080at 237.340 kb on - strand, within CA264_01080at 237.428 kb on + strand, within CA264_01080at 237.432 kb on + strand, within CA264_01080at 237.432 kb on + strand, within CA264_01080at 237.432 kb on + strand, within CA264_01080at 237.432 kb on + strand, within CA264_01080at 237.433 kb on - strand, within CA264_01080at 237.433 kb on - strand, within CA264_01080at 237.433 kb on - strand, within CA264_01080at 237.433 kb on - strand, within CA264_01080at 237.433 kb on - strand, within CA264_01080at 237.433 kb on - strand, within CA264_01080at 237.433 kb on - strand, within CA264_01080at 237.557 kb on - strand, within CA264_01080at 237.564 kb on + strand, within CA264_01080at 237.565 kb on - strand, within CA264_01080at 237.637 kb on + strandat 237.676 kb on + strandat 237.693 kb on + strandat 237.694 kb on - strandat 237.694 kb on - strandat 237.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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235,356 + +1.2
235,356 + +0.6
235,359 - -1.0
235,359 - -0.6
235,374 + -0.4
235,380 - -0.5
235,380 - -0.0
235,442 - -0.2
235,482 + CA264_01070 0.14 +0.2
235,482 + CA264_01070 0.14 +0.1
235,482 + CA264_01070 0.14 +0.8
235,483 - CA264_01070 0.15 -0.7
235,516 + CA264_01070 0.20 -0.9
235,516 + CA264_01070 0.20 -1.2
235,519 - CA264_01070 0.20 -1.8
235,523 + CA264_01070 0.21 -0.6
235,524 - CA264_01070 0.21 -1.0
235,697 - CA264_01070 0.47 +0.2
235,830 - CA264_01070 0.67 -0.6
235,932 - CA264_01070 0.83 -0.9
235,932 - CA264_01070 0.83 -1.3
235,942 - CA264_01070 0.84 -0.1
236,123 - +0.4
236,128 + -0.5
236,128 + +0.1
236,129 - -0.2
236,130 + -0.2
236,130 + -0.7
236,423 + CA264_01075 0.42 -0.1
236,424 - CA264_01075 0.42 -0.9
236,424 - CA264_01075 0.42 -0.7
236,424 - CA264_01075 0.42 -0.7
236,424 - CA264_01075 0.42 -1.1
236,536 + CA264_01075 0.59 +1.1
236,579 + CA264_01075 0.66 -1.3
236,579 + CA264_01075 0.66 -0.8
236,580 - CA264_01075 0.66 -0.8
236,583 + CA264_01075 0.66 -1.9
236,583 + CA264_01075 0.66 -0.2
236,585 + CA264_01075 0.67 -0.8
236,686 + CA264_01075 0.82 -0.6
236,687 - CA264_01075 0.82 -1.2
236,687 - CA264_01075 0.82 -0.6
236,810 + -0.5
236,811 - -0.7
236,820 - +0.2
236,821 + +0.0
236,821 + -2.4
236,821 + -0.1
236,821 + +0.5
236,822 - +0.2
236,904 + +0.2
236,904 + -1.6
236,904 + -0.0
236,909 + +0.0
236,917 - +0.1
237,139 + CA264_01080 0.28 -0.2
237,207 - CA264_01080 0.37 -0.5
237,216 - CA264_01080 0.38 -0.2
237,216 - CA264_01080 0.38 -0.5
237,218 - CA264_01080 0.38 -0.5
237,233 - CA264_01080 0.40 -0.8
237,233 - CA264_01080 0.40 -0.8
237,233 - CA264_01080 0.40 -0.6
237,263 + CA264_01080 0.44 -0.1
237,264 - CA264_01080 0.44 +0.9
237,274 + CA264_01080 0.45 +0.1
237,288 + CA264_01080 0.47 -1.1
237,288 + CA264_01080 0.47 -0.3
237,288 + CA264_01080 0.47 -0.2
237,289 - CA264_01080 0.47 -1.2
237,340 - CA264_01080 0.54 -0.9
237,340 - CA264_01080 0.54 -0.1
237,428 + CA264_01080 0.66 -0.7
237,432 + CA264_01080 0.66 -0.1
237,432 + CA264_01080 0.66 +0.7
237,432 + CA264_01080 0.66 -1.0
237,432 + CA264_01080 0.66 +0.0
237,433 - CA264_01080 0.66 -0.1
237,433 - CA264_01080 0.66 -0.8
237,433 - CA264_01080 0.66 -0.7
237,433 - CA264_01080 0.66 +0.4
237,433 - CA264_01080 0.66 -0.5
237,433 - CA264_01080 0.66 -0.3
237,433 - CA264_01080 0.66 -0.8
237,557 - CA264_01080 0.83 -0.7
237,564 + CA264_01080 0.83 -0.2
237,565 - CA264_01080 0.84 +0.9
237,637 + -0.5
237,676 + -0.7
237,693 + -0.9
237,694 - +0.1
237,694 - +1.2
237,802 + -0.4

Or see this region's nucleotide sequence