Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00280

Experiment: m.b. Lomefloxacin 0.004 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00270 and CA264_00275 are separated by 105 nucleotidesCA264_00275 and CA264_00280 are separated by 8 nucleotidesCA264_00280 and CA264_00285 are separated by 155 nucleotides CA264_00270: CA264_00270 - hypothetical protein, at 65,123 to 66,043 _00270 CA264_00275: CA264_00275 - hypothetical protein, at 66,149 to 66,562 _00275 CA264_00280: CA264_00280 - DegT/DnrJ/EryC1/StrS aminotransferase, at 66,571 to 67,683 _00280 CA264_00285: CA264_00285 - glycosyl transferase, at 67,839 to 68,786 _00285 Position (kb) 66 67 68Strain fitness (log2 ratio) -2 -1 0 1at 65.674 kb on + strand, within CA264_00270at 65.676 kb on + strand, within CA264_00270at 65.676 kb on + strand, within CA264_00270at 65.677 kb on - strand, within CA264_00270at 65.692 kb on - strand, within CA264_00270at 65.850 kb on + strand, within CA264_00270at 65.851 kb on - strand, within CA264_00270at 65.851 kb on - strand, within CA264_00270at 65.854 kb on - strand, within CA264_00270at 65.938 kb on - strand, within CA264_00270at 65.938 kb on - strand, within CA264_00270at 65.974 kb on - strandat 65.990 kb on - strandat 66.001 kb on + strandat 66.033 kb on + strandat 66.036 kb on + strandat 66.036 kb on + strandat 66.037 kb on - strandat 66.037 kb on - strandat 66.038 kb on + strandat 66.038 kb on + strandat 66.094 kb on + strandat 66.100 kb on + strandat 66.101 kb on - strandat 66.101 kb on - strandat 66.206 kb on + strand, within CA264_00275at 66.249 kb on + strand, within CA264_00275at 66.327 kb on + strand, within CA264_00275at 66.349 kb on + strand, within CA264_00275at 66.349 kb on + strand, within CA264_00275at 66.350 kb on - strand, within CA264_00275at 66.352 kb on - strand, within CA264_00275at 66.419 kb on + strand, within CA264_00275at 66.419 kb on + strand, within CA264_00275at 66.419 kb on + strand, within CA264_00275at 66.420 kb on - strand, within CA264_00275at 66.420 kb on - strand, within CA264_00275at 66.423 kb on + strand, within CA264_00275at 66.510 kb on - strand, within CA264_00275at 66.510 kb on - strand, within CA264_00275at 66.718 kb on - strand, within CA264_00280at 66.719 kb on + strand, within CA264_00280at 66.754 kb on + strand, within CA264_00280at 66.776 kb on + strand, within CA264_00280at 66.895 kb on + strand, within CA264_00280at 66.895 kb on + strand, within CA264_00280at 66.896 kb on - strand, within CA264_00280at 66.901 kb on + strand, within CA264_00280at 66.902 kb on - strand, within CA264_00280at 66.902 kb on - strand, within CA264_00280at 67.145 kb on + strand, within CA264_00280at 67.166 kb on + strand, within CA264_00280at 67.214 kb on - strand, within CA264_00280at 67.381 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.425 kb on + strand, within CA264_00280at 67.431 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.469 kb on - strand, within CA264_00280at 67.469 kb on - strand, within CA264_00280at 67.504 kb on + strand, within CA264_00280at 67.537 kb on - strand, within CA264_00280at 67.550 kb on - strand, within CA264_00280at 67.552 kb on - strand, within CA264_00280at 67.649 kb on + strandat 67.650 kb on - strandat 67.659 kb on - strandat 67.778 kb on + strandat 67.778 kb on + strandat 67.779 kb on - strandat 67.879 kb on - strandat 67.932 kb on + strandat 67.967 kb on + strand, within CA264_00285at 67.967 kb on + strand, within CA264_00285at 67.968 kb on - strand, within CA264_00285at 68.001 kb on + strand, within CA264_00285at 68.001 kb on + strand, within CA264_00285at 68.031 kb on - strand, within CA264_00285at 68.070 kb on - strand, within CA264_00285at 68.199 kb on + strand, within CA264_00285at 68.241 kb on + strand, within CA264_00285at 68.242 kb on - strand, within CA264_00285at 68.259 kb on + strand, within CA264_00285at 68.260 kb on - strand, within CA264_00285at 68.260 kb on - strand, within CA264_00285at 68.260 kb on - strand, within CA264_00285at 68.261 kb on + strand, within CA264_00285at 68.262 kb on - strand, within CA264_00285at 68.436 kb on + strand, within CA264_00285at 68.560 kb on + strand, within CA264_00285at 68.560 kb on + strand, within CA264_00285at 68.560 kb on + strand, within CA264_00285at 68.561 kb on - strand, within CA264_00285at 68.600 kb on - strand, within CA264_00285at 68.622 kb on + strand, within CA264_00285at 68.622 kb on + strand, within CA264_00285at 68.623 kb on - strand, within CA264_00285at 68.623 kb on - strand, within CA264_00285at 68.623 kb on - strand, within CA264_00285

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.004 mM
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65,674 + CA264_00270 0.60 -0.4
65,676 + CA264_00270 0.60 -0.4
65,676 + CA264_00270 0.60 -0.8
65,677 - CA264_00270 0.60 +0.6
65,692 - CA264_00270 0.62 -0.9
65,850 + CA264_00270 0.79 -0.5
65,851 - CA264_00270 0.79 +0.1
65,851 - CA264_00270 0.79 -0.4
65,854 - CA264_00270 0.79 +0.2
65,938 - CA264_00270 0.88 -0.3
65,938 - CA264_00270 0.88 -0.7
65,974 - +0.6
65,990 - -0.3
66,001 + -0.5
66,033 + -0.7
66,036 + -1.1
66,036 + -0.2
66,037 - -1.0
66,037 - -1.6
66,038 + +0.2
66,038 + -0.1
66,094 + -0.0
66,100 + +1.1
66,101 - -0.9
66,101 - -1.1
66,206 + CA264_00275 0.14 -0.4
66,249 + CA264_00275 0.24 +1.1
66,327 + CA264_00275 0.43 -0.9
66,349 + CA264_00275 0.48 -0.4
66,349 + CA264_00275 0.48 -0.1
66,350 - CA264_00275 0.49 -1.2
66,352 - CA264_00275 0.49 -0.4
66,419 + CA264_00275 0.65 -0.5
66,419 + CA264_00275 0.65 +0.2
66,419 + CA264_00275 0.65 +0.0
66,420 - CA264_00275 0.65 -0.5
66,420 - CA264_00275 0.65 -0.4
66,423 + CA264_00275 0.66 -0.1
66,510 - CA264_00275 0.87 -0.4
66,510 - CA264_00275 0.87 -0.1
66,718 - CA264_00280 0.13 -0.7
66,719 + CA264_00280 0.13 -0.9
66,754 + CA264_00280 0.16 -1.1
66,776 + CA264_00280 0.18 -0.5
66,895 + CA264_00280 0.29 -1.0
66,895 + CA264_00280 0.29 -0.5
66,896 - CA264_00280 0.29 +0.1
66,901 + CA264_00280 0.30 -0.9
66,902 - CA264_00280 0.30 -0.2
66,902 - CA264_00280 0.30 -0.1
67,145 + CA264_00280 0.52 -0.3
67,166 + CA264_00280 0.53 +0.6
67,214 - CA264_00280 0.58 +0.7
67,381 + CA264_00280 0.73 +0.2
67,420 + CA264_00280 0.76 -2.4
67,420 + CA264_00280 0.76 +0.1
67,420 + CA264_00280 0.76 -0.7
67,421 - CA264_00280 0.76 -0.9
67,421 - CA264_00280 0.76 -0.8
67,421 - CA264_00280 0.76 +0.0
67,421 - CA264_00280 0.76 -1.8
67,425 + CA264_00280 0.77 -0.2
67,431 + CA264_00280 0.77 -0.5
67,466 + CA264_00280 0.80 -0.2
67,466 + CA264_00280 0.80 +0.2
67,466 + CA264_00280 0.80 -0.7
67,467 - CA264_00280 0.81 +0.0
67,467 - CA264_00280 0.81 +0.1
67,467 - CA264_00280 0.81 -0.7
67,469 - CA264_00280 0.81 -0.9
67,469 - CA264_00280 0.81 -1.2
67,504 + CA264_00280 0.84 +0.1
67,537 - CA264_00280 0.87 -0.6
67,550 - CA264_00280 0.88 -0.2
67,552 - CA264_00280 0.88 -0.2
67,649 + -0.1
67,650 - -1.0
67,659 - +0.1
67,778 + -1.1
67,778 + -2.2
67,779 - +0.8
67,879 - -0.3
67,932 + -1.3
67,967 + CA264_00285 0.14 -2.1
67,967 + CA264_00285 0.14 +1.1
67,968 - CA264_00285 0.14 -0.5
68,001 + CA264_00285 0.17 -0.8
68,001 + CA264_00285 0.17 -0.7
68,031 - CA264_00285 0.20 -0.5
68,070 - CA264_00285 0.24 +0.0
68,199 + CA264_00285 0.38 -0.5
68,241 + CA264_00285 0.42 -0.8
68,242 - CA264_00285 0.43 -0.3
68,259 + CA264_00285 0.44 -0.4
68,260 - CA264_00285 0.44 -1.1
68,260 - CA264_00285 0.44 -0.7
68,260 - CA264_00285 0.44 -0.8
68,261 + CA264_00285 0.45 +0.2
68,262 - CA264_00285 0.45 +0.8
68,436 + CA264_00285 0.63 -0.9
68,560 + CA264_00285 0.76 -1.1
68,560 + CA264_00285 0.76 -1.2
68,560 + CA264_00285 0.76 -0.5
68,561 - CA264_00285 0.76 -0.8
68,600 - CA264_00285 0.80 +0.5
68,622 + CA264_00285 0.83 -0.5
68,622 + CA264_00285 0.83 -0.4
68,623 - CA264_00285 0.83 +0.1
68,623 - CA264_00285 0.83 +0.1
68,623 - CA264_00285 0.83 -0.0

Or see this region's nucleotide sequence