Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5537 and Atu5538 overlap by 4 nucleotides Atu5538 and Atu5539 are separated by 225 nucleotides Atu5539 and Atu5540 overlap by 4 nucleotides Atu5540 and Atu5541 overlap by 4 nucleotides
Atu5537: Atu5537 - mercuric reductase, at 532,146 to 533,507
Atu5537
Atu5538: Atu5538 - hypothetical protein, at 533,504 to 533,965
Atu5538
Atu5539: Atu5539 - HlyD family secretion protein, at 534,191 to 535,066
Atu5539
Atu5540: Atu5540 - hypothetical protein, at 535,063 to 535,272
Atu5540
Atu5541: Atu5541 - hypothetical protein, at 535,269 to 537,218
Atu5541
Position (kb) 534
535
536 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 533.218 kb on - strand, within Atu5537 at 533.241 kb on - strand, within Atu5537 at 533.263 kb on + strand, within Atu5537 at 533.287 kb on + strand, within Atu5537 at 533.311 kb on + strand, within Atu5537 at 533.343 kb on - strand, within Atu5537 at 533.356 kb on - strand, within Atu5537 at 533.373 kb on - strand at 533.474 kb on - strand at 533.491 kb on + strand at 533.509 kb on - strand at 533.583 kb on - strand, within Atu5538 at 533.617 kb on - strand, within Atu5538 at 533.628 kb on + strand, within Atu5538 at 533.660 kb on - strand, within Atu5538 at 533.678 kb on + strand, within Atu5538 at 533.700 kb on + strand, within Atu5538 at 533.701 kb on - strand, within Atu5538 at 533.735 kb on + strand, within Atu5538 at 533.831 kb on - strand, within Atu5538 at 533.886 kb on + strand, within Atu5538 at 533.910 kb on + strand, within Atu5538 at 534.047 kb on + strand at 534.062 kb on - strand at 534.081 kb on + strand at 534.084 kb on - strand at 534.084 kb on - strand at 534.089 kb on - strand at 534.091 kb on + strand at 534.143 kb on + strand at 534.187 kb on - strand at 534.187 kb on - strand at 534.225 kb on - strand at 534.225 kb on - strand at 534.246 kb on - strand at 534.303 kb on - strand, within Atu5539 at 534.308 kb on - strand, within Atu5539 at 534.339 kb on + strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.422 kb on - strand, within Atu5539 at 534.426 kb on + strand, within Atu5539 at 534.477 kb on - strand, within Atu5539 at 534.551 kb on + strand, within Atu5539 at 534.597 kb on + strand, within Atu5539 at 534.615 kb on + strand, within Atu5539 at 534.617 kb on - strand, within Atu5539 at 534.640 kb on + strand, within Atu5539 at 534.715 kb on + strand, within Atu5539 at 534.715 kb on - strand, within Atu5539 at 534.771 kb on + strand, within Atu5539 at 534.773 kb on - strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.940 kb on + strand, within Atu5539 at 534.959 kb on + strand, within Atu5539 at 534.992 kb on + strand at 535.008 kb on - strand at 535.109 kb on + strand, within Atu5540 at 535.253 kb on + strand at 535.271 kb on + strand at 535.305 kb on - strand at 535.351 kb on - strand at 535.351 kb on - strand at 535.376 kb on + strand at 535.408 kb on - strand at 535.444 kb on - strand at 535.506 kb on + strand, within Atu5541 at 535.506 kb on + strand, within Atu5541 at 535.506 kb on + strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.514 kb on - strand, within Atu5541 at 535.516 kb on - strand, within Atu5541 at 535.518 kb on + strand, within Atu5541 at 535.536 kb on - strand, within Atu5541 at 535.565 kb on - strand, within Atu5541 at 535.565 kb on - strand, within Atu5541 at 535.595 kb on - strand, within Atu5541 at 535.619 kb on + strand, within Atu5541 at 535.620 kb on - strand, within Atu5541 at 535.669 kb on + strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.776 kb on - strand, within Atu5541 at 535.795 kb on + strand, within Atu5541 at 535.795 kb on + strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.803 kb on - strand, within Atu5541 at 535.946 kb on - strand, within Atu5541 at 535.946 kb on - strand, within Atu5541 at 535.962 kb on - strand, within Atu5541 at 535.964 kb on + strand, within Atu5541 at 535.970 kb on + strand, within Atu5541
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 533,218 - Atu5537 0.79 +1.4 533,241 - Atu5537 0.80 -0.6 533,263 + Atu5537 0.82 -1.1 533,287 + Atu5537 0.84 +1.1 533,311 + Atu5537 0.86 +0.8 533,343 - Atu5537 0.88 +1.1 533,356 - Atu5537 0.89 +0.6 533,373 - +0.4 533,474 - +1.4 533,491 + -1.2 533,509 - -0.7 533,583 - Atu5538 0.17 +0.9 533,617 - Atu5538 0.24 +0.9 533,628 + Atu5538 0.27 -0.4 533,660 - Atu5538 0.34 +0.9 533,678 + Atu5538 0.38 +0.1 533,700 + Atu5538 0.42 +1.0 533,701 - Atu5538 0.43 +1.4 533,735 + Atu5538 0.50 +1.1 533,831 - Atu5538 0.71 +0.2 533,886 + Atu5538 0.83 -0.8 533,910 + Atu5538 0.88 +1.4 534,047 + +0.9 534,062 - -0.4 534,081 + -0.1 534,084 - +0.5 534,084 - +0.2 534,089 - +0.8 534,091 + -0.2 534,143 + -0.0 534,187 - +1.7 534,187 - +0.7 534,225 - +2.0 534,225 - -0.7 534,246 - +2.5 534,303 - Atu5539 0.13 +1.1 534,308 - Atu5539 0.13 +1.1 534,339 + Atu5539 0.17 +0.7 534,422 - Atu5539 0.26 +3.1 534,422 - Atu5539 0.26 +2.7 534,426 + Atu5539 0.27 -0.3 534,477 - Atu5539 0.33 +2.4 534,551 + Atu5539 0.41 +1.6 534,597 + Atu5539 0.46 +1.0 534,615 + Atu5539 0.48 +0.8 534,617 - Atu5539 0.49 +0.8 534,640 + Atu5539 0.51 +0.6 534,715 + Atu5539 0.60 -0.0 534,715 - Atu5539 0.60 -0.1 534,771 + Atu5539 0.66 +0.9 534,773 - Atu5539 0.66 +0.4 534,940 + Atu5539 0.86 +1.1 534,940 + Atu5539 0.86 +1.1 534,959 + Atu5539 0.88 -1.1 534,992 + +2.1 535,008 - -0.0 535,109 + Atu5540 0.22 +0.7 535,253 + -2.0 535,271 + +1.2 535,305 - +0.9 535,351 - +0.1 535,351 - -0.5 535,376 + +0.9 535,408 - +0.1 535,444 - -0.0 535,506 + Atu5541 0.12 +0.2 535,506 + Atu5541 0.12 -0.1 535,506 + Atu5541 0.12 +0.3 535,514 - Atu5541 0.13 +1.1 535,514 - Atu5541 0.13 +2.4 535,514 - Atu5541 0.13 +1.8 535,514 - Atu5541 0.13 +1.3 535,516 - Atu5541 0.13 +0.4 535,518 + Atu5541 0.13 -0.7 535,536 - Atu5541 0.14 -1.2 535,565 - Atu5541 0.15 +0.0 535,565 - Atu5541 0.15 +0.2 535,595 - Atu5541 0.17 -0.3 535,619 + Atu5541 0.18 -3.2 535,620 - Atu5541 0.18 +0.8 535,669 + Atu5541 0.21 +0.3 535,776 - Atu5541 0.26 +0.5 535,776 - Atu5541 0.26 +0.5 535,776 - Atu5541 0.26 +1.3 535,795 + Atu5541 0.27 -0.0 535,795 + Atu5541 0.27 +1.8 535,803 - Atu5541 0.27 -0.6 535,803 - Atu5541 0.27 +0.6 535,803 - Atu5541 0.27 +0.5 535,946 - Atu5541 0.35 +0.7 535,946 - Atu5541 0.35 -0.4 535,962 - Atu5541 0.36 +1.2 535,964 + Atu5541 0.36 +1.5 535,970 + Atu5541 0.36 -0.5
Or see this region's nucleotide sequence