Strain Fitness in Pseudomonas simiae WCS417 around PS417_12870

Experiment: L-Isoleucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12865 and PS417_12870 are separated by 192 nucleotidesPS417_12870 and PS417_12875 are separated by 5 nucleotidesPS417_12875 and PS417_12880 overlap by 33 nucleotides PS417_12865: PS417_12865 - chloride channel protein, at 2,813,746 to 2,814,993 _12865 PS417_12870: PS417_12870 - enoyl-CoA hydratase, at 2,815,186 to 2,815,998 _12870 PS417_12875: PS417_12875 - NADH pyrophosphatase, at 2,816,004 to 2,816,837 _12875 PS417_12880: PS417_12880 - membrane protein, at 2,816,805 to 2,817,584 _12880 Position (kb) 2815 2816Strain fitness (log2 ratio) -1 0 1 2 3at 2814.346 kb on + strand, within PS417_12865at 2814.346 kb on + strand, within PS417_12865at 2814.347 kb on - strand, within PS417_12865at 2814.443 kb on - strand, within PS417_12865at 2814.483 kb on - strand, within PS417_12865at 2814.865 kb on - strand, within PS417_12865at 2814.994 kb on - strandat 2815.022 kb on + strandat 2815.022 kb on + strandat 2815.023 kb on - strandat 2815.023 kb on - strandat 2815.023 kb on - strandat 2815.025 kb on - strandat 2815.145 kb on - strandat 2815.145 kb on - strandat 2815.146 kb on + strandat 2815.146 kb on + strandat 2815.146 kb on + strandat 2815.147 kb on - strandat 2815.147 kb on - strandat 2815.147 kb on - strandat 2815.147 kb on - strandat 2815.159 kb on - strandat 2815.702 kb on + strand, within PS417_12870at 2815.865 kb on - strand, within PS417_12870at 2815.900 kb on + strand, within PS417_12870at 2815.923 kb on + strandat 2816.298 kb on + strand, within PS417_12875at 2816.391 kb on + strand, within PS417_12875at 2816.392 kb on - strand, within PS417_12875at 2816.509 kb on - strand, within PS417_12875at 2816.509 kb on - strand, within PS417_12875at 2816.509 kb on - strand, within PS417_12875at 2816.509 kb on - strand, within PS417_12875at 2816.590 kb on + strand, within PS417_12875at 2816.604 kb on - strand, within PS417_12875at 2816.610 kb on + strand, within PS417_12875at 2816.610 kb on + strand, within PS417_12875at 2816.610 kb on + strandat 2816.611 kb on - strand, within PS417_12875at 2816.611 kb on - strand, within PS417_12875at 2816.611 kb on - strand, within PS417_12875at 2816.611 kb on - strand, within PS417_12875at 2816.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (C)
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2,814,346 + PS417_12865 0.48 -0.3
2,814,346 + PS417_12865 0.48 -0.4
2,814,347 - PS417_12865 0.48 +0.7
2,814,443 - PS417_12865 0.56 +1.1
2,814,483 - PS417_12865 0.59 -1.1
2,814,865 - PS417_12865 0.90 +0.1
2,814,994 - -0.2
2,815,022 + -0.1
2,815,022 + -0.2
2,815,023 - +0.4
2,815,023 - -0.9
2,815,023 - -0.9
2,815,025 - -0.1
2,815,145 - +0.4
2,815,145 - -0.1
2,815,146 + -0.3
2,815,146 + +0.3
2,815,146 + -0.0
2,815,147 - -0.5
2,815,147 - -0.0
2,815,147 - +0.3
2,815,147 - -0.5
2,815,159 - +0.2
2,815,702 + PS417_12870 0.63 +0.1
2,815,865 - PS417_12870 0.84 -0.0
2,815,900 + PS417_12870 0.88 +3.2
2,815,923 + -0.2
2,816,298 + PS417_12875 0.35 +0.0
2,816,391 + PS417_12875 0.46 +1.2
2,816,392 - PS417_12875 0.47 -0.2
2,816,509 - PS417_12875 0.61 -1.7
2,816,509 - PS417_12875 0.61 +0.4
2,816,509 - PS417_12875 0.61 -0.9
2,816,509 - PS417_12875 0.61 -0.0
2,816,590 + PS417_12875 0.70 +0.4
2,816,604 - PS417_12875 0.72 -0.3
2,816,610 + PS417_12875 0.73 -0.3
2,816,610 + PS417_12875 0.73 -0.9
2,816,610 + +1.7
2,816,611 - PS417_12875 0.73 +0.4
2,816,611 - PS417_12875 0.73 +1.0
2,816,611 - PS417_12875 0.73 +0.1
2,816,611 - PS417_12875 0.73 +0.0
2,816,791 - +0.1

Or see this region's nucleotide sequence