Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3921 and Echvi_3922 are separated by 55 nucleotides Echvi_3922 and Echvi_3923 overlap by 81 nucleotides
Echvi_3921: Echvi_3921 - TonB-linked outer membrane protein, SusC/RagA family, at 4,695,630 to 4,699,151
_3921
Echvi_3922: Echvi_3922 - hypothetical protein, at 4,699,207 to 4,699,380
_3922
Echvi_3923: Echvi_3923 - Fe2+-dicitrate sensor, membrane component, at 4,699,300 to 4,700,334
_3923
Position (kb)
4699
4700 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4698.296 kb on - strand, within Echvi_3921 at 4698.398 kb on + strand, within Echvi_3921 at 4698.399 kb on - strand, within Echvi_3921 at 4698.405 kb on + strand, within Echvi_3921 at 4698.434 kb on + strand, within Echvi_3921 at 4698.434 kb on + strand, within Echvi_3921 at 4698.435 kb on - strand, within Echvi_3921 at 4698.453 kb on - strand, within Echvi_3921 at 4698.467 kb on + strand, within Echvi_3921 at 4698.468 kb on - strand, within Echvi_3921 at 4698.546 kb on + strand, within Echvi_3921 at 4698.546 kb on + strand, within Echvi_3921 at 4698.546 kb on + strand, within Echvi_3921 at 4698.547 kb on - strand, within Echvi_3921 at 4698.547 kb on - strand, within Echvi_3921 at 4698.547 kb on - strand, within Echvi_3921 at 4698.587 kb on - strand, within Echvi_3921 at 4698.603 kb on + strand, within Echvi_3921 at 4698.604 kb on - strand, within Echvi_3921 at 4698.662 kb on + strand, within Echvi_3921 at 4698.744 kb on + strand, within Echvi_3921 at 4698.744 kb on + strand, within Echvi_3921 at 4698.744 kb on + strand, within Echvi_3921 at 4698.744 kb on + strand, within Echvi_3921 at 4698.745 kb on - strand, within Echvi_3921 at 4698.745 kb on - strand, within Echvi_3921 at 4698.758 kb on - strand, within Echvi_3921 at 4698.805 kb on + strand at 4698.805 kb on + strand at 4698.806 kb on - strand at 4698.806 kb on - strand at 4698.806 kb on - strand at 4698.806 kb on - strand at 4698.809 kb on + strand at 4698.922 kb on - strand at 4698.922 kb on - strand at 4698.942 kb on - strand at 4698.975 kb on - strand at 4699.018 kb on + strand at 4699.018 kb on + strand at 4699.018 kb on + strand at 4699.018 kb on + strand at 4699.018 kb on + strand at 4699.018 kb on + strand at 4699.019 kb on - strand at 4699.019 kb on - strand at 4699.019 kb on - strand at 4699.019 kb on - strand at 4699.019 kb on - strand at 4699.019 kb on - strand at 4699.062 kb on + strand at 4699.108 kb on + strand at 4699.108 kb on + strand at 4699.152 kb on - strand at 4699.155 kb on + strand at 4699.156 kb on - strand at 4699.156 kb on - strand at 4699.171 kb on - strand at 4699.174 kb on + strand at 4699.230 kb on - strand, within Echvi_3922 at 4699.308 kb on + strand at 4699.308 kb on + strand at 4699.327 kb on + strand at 4699.378 kb on + strand at 4699.435 kb on + strand, within Echvi_3923 at 4699.436 kb on - strand, within Echvi_3923 at 4699.454 kb on + strand, within Echvi_3923 at 4699.468 kb on + strand, within Echvi_3923 at 4699.500 kb on + strand, within Echvi_3923 at 4699.509 kb on + strand, within Echvi_3923 at 4699.512 kb on + strand, within Echvi_3923 at 4699.512 kb on + strand, within Echvi_3923 at 4699.512 kb on + strand, within Echvi_3923 at 4699.512 kb on + strand, within Echvi_3923 at 4699.513 kb on - strand, within Echvi_3923 at 4699.513 kb on - strand, within Echvi_3923 at 4699.513 kb on - strand, within Echvi_3923 at 4699.542 kb on - strand, within Echvi_3923 at 4699.563 kb on + strand, within Echvi_3923 at 4699.563 kb on + strand, within Echvi_3923 at 4699.563 kb on + strand, within Echvi_3923 at 4699.563 kb on + strand, within Echvi_3923 at 4699.566 kb on + strand, within Echvi_3923 at 4699.577 kb on + strand, within Echvi_3923 at 4699.577 kb on + strand, within Echvi_3923 at 4699.578 kb on - strand, within Echvi_3923 at 4699.599 kb on + strand, within Echvi_3923 at 4699.599 kb on + strand, within Echvi_3923 at 4699.599 kb on + strand, within Echvi_3923 at 4699.599 kb on + strand, within Echvi_3923 at 4699.600 kb on - strand, within Echvi_3923 at 4699.603 kb on + strand, within Echvi_3923 at 4699.604 kb on - strand, within Echvi_3923 at 4699.604 kb on - strand, within Echvi_3923 at 4699.611 kb on + strand, within Echvi_3923 at 4699.612 kb on - strand, within Echvi_3923 at 4699.633 kb on - strand, within Echvi_3923 at 4699.651 kb on - strand, within Echvi_3923 at 4699.663 kb on + strand, within Echvi_3923 at 4699.752 kb on + strand, within Echvi_3923 at 4699.753 kb on - strand, within Echvi_3923 at 4699.753 kb on - strand, within Echvi_3923 at 4699.770 kb on + strand, within Echvi_3923 at 4699.869 kb on + strand, within Echvi_3923 at 4699.870 kb on - strand, within Echvi_3923 at 4699.870 kb on - strand, within Echvi_3923 at 4699.886 kb on + strand, within Echvi_3923 at 4699.888 kb on + strand, within Echvi_3923 at 4699.889 kb on - strand, within Echvi_3923 at 4699.904 kb on - strand, within Echvi_3923 at 4699.998 kb on + strand, within Echvi_3923 at 4699.998 kb on + strand, within Echvi_3923 at 4699.998 kb on + strand, within Echvi_3923 at 4699.998 kb on + strand, within Echvi_3923 at 4699.999 kb on - strand, within Echvi_3923 at 4699.999 kb on - strand, within Echvi_3923 at 4699.999 kb on - strand, within Echvi_3923 at 4699.999 kb on - strand, within Echvi_3923 at 4700.051 kb on + strand, within Echvi_3923 at 4700.135 kb on - strand, within Echvi_3923 at 4700.135 kb on - strand, within Echvi_3923 at 4700.135 kb on - strand, within Echvi_3923 at 4700.210 kb on + strand, within Echvi_3923 at 4700.210 kb on + strand, within Echvi_3923 at 4700.210 kb on + strand at 4700.211 kb on - strand, within Echvi_3923 at 4700.270 kb on - strand at 4700.270 kb on - strand at 4700.317 kb on + strand at 4700.319 kb on + strand at 4700.320 kb on - strand at 4700.320 kb on - strand at 4700.353 kb on - strand at 4700.353 kb on - strand at 4700.359 kb on - strand at 4700.359 kb on - strand at 4700.374 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,698,296 - Echvi_3921 0.76 +0.8 4,698,398 + Echvi_3921 0.79 +0.8 4,698,399 - Echvi_3921 0.79 +0.0 4,698,405 + Echvi_3921 0.79 -2.0 4,698,434 + Echvi_3921 0.80 -0.6 4,698,434 + Echvi_3921 0.80 -0.1 4,698,435 - Echvi_3921 0.80 -0.2 4,698,453 - Echvi_3921 0.80 -0.4 4,698,467 + Echvi_3921 0.81 +0.1 4,698,468 - Echvi_3921 0.81 -0.7 4,698,546 + Echvi_3921 0.83 -0.9 4,698,546 + Echvi_3921 0.83 +2.1 4,698,546 + Echvi_3921 0.83 -0.6 4,698,547 - Echvi_3921 0.83 -1.4 4,698,547 - Echvi_3921 0.83 -0.1 4,698,547 - Echvi_3921 0.83 -0.3 4,698,587 - Echvi_3921 0.84 -0.6 4,698,603 + Echvi_3921 0.84 +0.4 4,698,604 - Echvi_3921 0.84 +0.4 4,698,662 + Echvi_3921 0.86 +2.6 4,698,744 + Echvi_3921 0.88 -1.0 4,698,744 + Echvi_3921 0.88 +1.8 4,698,744 + Echvi_3921 0.88 -0.4 4,698,744 + Echvi_3921 0.88 -0.2 4,698,745 - Echvi_3921 0.88 -2.5 4,698,745 - Echvi_3921 0.88 +1.1 4,698,758 - Echvi_3921 0.89 -0.2 4,698,805 + +0.4 4,698,805 + -1.0 4,698,806 - +0.0 4,698,806 - -0.9 4,698,806 - +0.5 4,698,806 - -2.3 4,698,809 + -0.4 4,698,922 - -0.2 4,698,922 - -0.1 4,698,942 - +2.2 4,698,975 - -0.4 4,699,018 + -1.4 4,699,018 + +0.5 4,699,018 + +0.8 4,699,018 + +1.1 4,699,018 + -1.2 4,699,018 + +0.8 4,699,019 - +2.8 4,699,019 - -0.1 4,699,019 - +0.6 4,699,019 - -0.4 4,699,019 - +0.2 4,699,019 - +0.8 4,699,062 + +0.8 4,699,108 + -0.1 4,699,108 + -1.6 4,699,152 - +0.1 4,699,155 + +0.7 4,699,156 - -0.8 4,699,156 - -0.5 4,699,171 - +1.1 4,699,174 + -0.4 4,699,230 - Echvi_3922 0.13 +1.6 4,699,308 + +0.3 4,699,308 + +1.2 4,699,327 + -2.0 4,699,378 + -0.3 4,699,435 + Echvi_3923 0.13 +1.8 4,699,436 - Echvi_3923 0.13 +2.3 4,699,454 + Echvi_3923 0.15 +0.2 4,699,468 + Echvi_3923 0.16 -0.8 4,699,500 + Echvi_3923 0.19 -1.8 4,699,509 + Echvi_3923 0.20 +0.7 4,699,512 + Echvi_3923 0.20 +0.7 4,699,512 + Echvi_3923 0.20 -1.1 4,699,512 + Echvi_3923 0.20 +1.0 4,699,512 + Echvi_3923 0.20 -0.2 4,699,513 - Echvi_3923 0.21 +0.6 4,699,513 - Echvi_3923 0.21 +1.6 4,699,513 - Echvi_3923 0.21 +2.2 4,699,542 - Echvi_3923 0.23 +2.5 4,699,563 + Echvi_3923 0.25 -0.6 4,699,563 + Echvi_3923 0.25 +0.0 4,699,563 + Echvi_3923 0.25 +0.1 4,699,563 + Echvi_3923 0.25 -0.5 4,699,566 + Echvi_3923 0.26 -0.8 4,699,577 + Echvi_3923 0.27 -0.5 4,699,577 + Echvi_3923 0.27 -0.9 4,699,578 - Echvi_3923 0.27 +2.7 4,699,599 + Echvi_3923 0.29 -0.5 4,699,599 + Echvi_3923 0.29 -1.4 4,699,599 + Echvi_3923 0.29 -1.0 4,699,599 + Echvi_3923 0.29 -2.2 4,699,600 - Echvi_3923 0.29 +2.8 4,699,603 + Echvi_3923 0.29 +0.8 4,699,604 - Echvi_3923 0.29 +2.2 4,699,604 - Echvi_3923 0.29 +1.9 4,699,611 + Echvi_3923 0.30 -0.3 4,699,612 - Echvi_3923 0.30 +1.8 4,699,633 - Echvi_3923 0.32 +2.0 4,699,651 - Echvi_3923 0.34 +2.7 4,699,663 + Echvi_3923 0.35 -0.5 4,699,752 + Echvi_3923 0.44 -1.5 4,699,753 - Echvi_3923 0.44 +2.6 4,699,753 - Echvi_3923 0.44 +0.7 4,699,770 + Echvi_3923 0.45 -3.1 4,699,869 + Echvi_3923 0.55 -1.2 4,699,870 - Echvi_3923 0.55 +3.1 4,699,870 - Echvi_3923 0.55 +2.4 4,699,886 + Echvi_3923 0.57 -0.3 4,699,888 + Echvi_3923 0.57 +3.6 4,699,889 - Echvi_3923 0.57 +1.9 4,699,904 - Echvi_3923 0.58 +3.1 4,699,998 + Echvi_3923 0.67 +1.3 4,699,998 + Echvi_3923 0.67 +1.6 4,699,998 + Echvi_3923 0.67 +0.4 4,699,998 + Echvi_3923 0.67 -0.3 4,699,999 - Echvi_3923 0.68 +1.9 4,699,999 - Echvi_3923 0.68 +1.9 4,699,999 - Echvi_3923 0.68 +1.4 4,699,999 - Echvi_3923 0.68 +2.4 4,700,051 + Echvi_3923 0.73 -0.5 4,700,135 - Echvi_3923 0.81 +1.6 4,700,135 - Echvi_3923 0.81 +1.9 4,700,135 - Echvi_3923 0.81 +2.5 4,700,210 + Echvi_3923 0.88 +0.1 4,700,210 + Echvi_3923 0.88 +0.1 4,700,210 + +1.2 4,700,211 - Echvi_3923 0.88 +2.6 4,700,270 - +2.2 4,700,270 - +2.7 4,700,317 + -1.8 4,700,319 + +1.1 4,700,320 - +2.7 4,700,320 - +2.4 4,700,353 - +2.2 4,700,353 - +2.4 4,700,359 - +2.2 4,700,359 - +2.6 4,700,374 - +2.6
Or see this region's nucleotide sequence