Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2276

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2275 and Echvi_2276 are separated by 83 nucleotidesEchvi_2276 and Echvi_2277 are separated by 21 nucleotides Echvi_2275: Echvi_2275 - translesion DNA polymerase (imuC-like) (from data), at 2,693,898 to 2,696,906 _2275 Echvi_2276: Echvi_2276 - Cysteine-rich domain., at 2,696,990 to 2,697,505 _2276 Echvi_2277: Echvi_2277 - Choline-glycine betaine transporter, at 2,697,527 to 2,699,065 _2277 Position (kb) 2696 2697 2698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2695.997 kb on - strand, within Echvi_2275at 2695.997 kb on - strand, within Echvi_2275at 2696.000 kb on - strand, within Echvi_2275at 2696.051 kb on - strand, within Echvi_2275at 2696.131 kb on + strand, within Echvi_2275at 2696.152 kb on + strand, within Echvi_2275at 2696.167 kb on - strand, within Echvi_2275at 2696.227 kb on + strand, within Echvi_2275at 2696.228 kb on - strand, within Echvi_2275at 2696.256 kb on + strand, within Echvi_2275at 2696.285 kb on - strand, within Echvi_2275at 2696.366 kb on + strand, within Echvi_2275at 2696.388 kb on + strand, within Echvi_2275at 2696.388 kb on + strand, within Echvi_2275at 2696.388 kb on + strandat 2696.388 kb on + strand, within Echvi_2275at 2696.389 kb on - strand, within Echvi_2275at 2696.449 kb on - strand, within Echvi_2275at 2696.541 kb on + strand, within Echvi_2275at 2696.570 kb on - strand, within Echvi_2275at 2696.630 kb on + strandat 2696.692 kb on + strandat 2696.693 kb on - strandat 2696.705 kb on + strandat 2696.764 kb on - strandat 2696.786 kb on + strandat 2696.787 kb on - strandat 2696.880 kb on - strandat 2696.880 kb on - strandat 2696.911 kb on - strandat 2696.911 kb on - strandat 2696.911 kb on - strandat 2696.933 kb on - strandat 2697.043 kb on + strand, within Echvi_2276at 2697.043 kb on + strand, within Echvi_2276at 2697.043 kb on + strand, within Echvi_2276at 2697.044 kb on - strand, within Echvi_2276at 2697.047 kb on + strand, within Echvi_2276at 2697.048 kb on - strand, within Echvi_2276at 2697.048 kb on - strand, within Echvi_2276at 2697.106 kb on - strand, within Echvi_2276at 2697.133 kb on + strand, within Echvi_2276at 2697.259 kb on + strand, within Echvi_2276at 2697.260 kb on - strand, within Echvi_2276at 2697.290 kb on + strand, within Echvi_2276at 2697.291 kb on - strand, within Echvi_2276at 2697.305 kb on + strand, within Echvi_2276at 2697.306 kb on - strand, within Echvi_2276at 2697.314 kb on + strand, within Echvi_2276at 2697.359 kb on - strand, within Echvi_2276at 2697.392 kb on + strand, within Echvi_2276at 2697.418 kb on + strand, within Echvi_2276at 2697.461 kb on + strandat 2697.461 kb on + strandat 2697.462 kb on - strandat 2697.465 kb on + strandat 2697.468 kb on - strandat 2697.468 kb on - strandat 2697.488 kb on + strandat 2697.496 kb on + strandat 2697.496 kb on + strandat 2697.506 kb on + strandat 2697.541 kb on - strandat 2697.541 kb on - strandat 2697.569 kb on + strandat 2697.686 kb on + strand, within Echvi_2277at 2697.687 kb on - strand, within Echvi_2277at 2697.687 kb on - strand, within Echvi_2277at 2697.751 kb on + strand, within Echvi_2277at 2697.754 kb on + strand, within Echvi_2277at 2697.755 kb on - strand, within Echvi_2277at 2697.799 kb on - strand, within Echvi_2277at 2697.871 kb on - strand, within Echvi_2277at 2697.937 kb on - strand, within Echvi_2277at 2697.937 kb on - strand, within Echvi_2277at 2697.961 kb on + strand, within Echvi_2277at 2697.962 kb on - strand, within Echvi_2277at 2698.003 kb on + strand, within Echvi_2277at 2698.148 kb on + strand, within Echvi_2277at 2698.148 kb on + strand, within Echvi_2277at 2698.149 kb on - strand, within Echvi_2277at 2698.149 kb on - strand, within Echvi_2277at 2698.149 kb on - strand, within Echvi_2277at 2698.172 kb on - strand, within Echvi_2277at 2698.177 kb on - strand, within Echvi_2277at 2698.177 kb on - strand, within Echvi_2277at 2698.194 kb on + strand, within Echvi_2277at 2698.302 kb on - strand, within Echvi_2277at 2698.377 kb on - strand, within Echvi_2277at 2698.409 kb on + strand, within Echvi_2277at 2698.410 kb on - strand, within Echvi_2277at 2698.410 kb on - strand, within Echvi_2277at 2698.410 kb on - strand, within Echvi_2277at 2698.415 kb on + strand, within Echvi_2277at 2698.416 kb on - strand, within Echvi_2277at 2698.479 kb on - strand, within Echvi_2277

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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2,695,997 - Echvi_2275 0.70 +0.6
2,695,997 - Echvi_2275 0.70 -1.1
2,696,000 - Echvi_2275 0.70 -2.8
2,696,051 - Echvi_2275 0.72 -1.9
2,696,131 + Echvi_2275 0.74 +0.4
2,696,152 + Echvi_2275 0.75 -1.4
2,696,167 - Echvi_2275 0.75 -0.3
2,696,227 + Echvi_2275 0.77 -1.1
2,696,228 - Echvi_2275 0.77 -2.2
2,696,256 + Echvi_2275 0.78 -0.7
2,696,285 - Echvi_2275 0.79 -1.0
2,696,366 + Echvi_2275 0.82 +1.7
2,696,388 + Echvi_2275 0.83 +1.7
2,696,388 + Echvi_2275 0.83 -1.0
2,696,388 + +2.3
2,696,388 + Echvi_2275 0.83 +0.8
2,696,389 - Echvi_2275 0.83 +0.7
2,696,449 - Echvi_2275 0.85 -0.0
2,696,541 + Echvi_2275 0.88 +1.7
2,696,570 - Echvi_2275 0.89 +1.5
2,696,630 + -1.5
2,696,692 + -0.6
2,696,693 - +1.1
2,696,705 + +1.2
2,696,764 - -0.5
2,696,786 + +2.1
2,696,787 - +0.1
2,696,880 - +0.7
2,696,880 - +0.3
2,696,911 - -1.1
2,696,911 - +0.4
2,696,911 - +0.1
2,696,933 - -0.4
2,697,043 + Echvi_2276 0.10 -0.1
2,697,043 + Echvi_2276 0.10 -0.1
2,697,043 + Echvi_2276 0.10 -0.7
2,697,044 - Echvi_2276 0.10 -0.9
2,697,047 + Echvi_2276 0.11 -0.4
2,697,048 - Echvi_2276 0.11 -1.4
2,697,048 - Echvi_2276 0.11 +0.0
2,697,106 - Echvi_2276 0.22 -0.4
2,697,133 + Echvi_2276 0.28 +0.4
2,697,259 + Echvi_2276 0.52 -4.0
2,697,260 - Echvi_2276 0.52 -0.5
2,697,290 + Echvi_2276 0.58 -1.8
2,697,291 - Echvi_2276 0.58 +0.4
2,697,305 + Echvi_2276 0.61 -4.1
2,697,306 - Echvi_2276 0.61 -3.4
2,697,314 + Echvi_2276 0.63 -1.8
2,697,359 - Echvi_2276 0.72 -2.3
2,697,392 + Echvi_2276 0.78 -0.9
2,697,418 + Echvi_2276 0.83 -0.6
2,697,461 + -0.6
2,697,461 + -2.5
2,697,462 - -0.6
2,697,465 + -2.5
2,697,468 - -3.1
2,697,468 - +0.4
2,697,488 + +1.3
2,697,496 + -0.4
2,697,496 + +1.4
2,697,506 + -0.1
2,697,541 - +0.6
2,697,541 - +0.6
2,697,569 + +1.2
2,697,686 + Echvi_2277 0.10 -0.9
2,697,687 - Echvi_2277 0.10 +0.2
2,697,687 - Echvi_2277 0.10 -0.6
2,697,751 + Echvi_2277 0.15 +0.5
2,697,754 + Echvi_2277 0.15 +0.2
2,697,755 - Echvi_2277 0.15 -1.2
2,697,799 - Echvi_2277 0.18 -2.1
2,697,871 - Echvi_2277 0.22 -0.1
2,697,937 - Echvi_2277 0.27 +0.2
2,697,937 - Echvi_2277 0.27 +0.1
2,697,961 + Echvi_2277 0.28 +0.4
2,697,962 - Echvi_2277 0.28 -0.6
2,698,003 + Echvi_2277 0.31 -0.4
2,698,148 + Echvi_2277 0.40 +0.8
2,698,148 + Echvi_2277 0.40 +1.2
2,698,149 - Echvi_2277 0.40 +1.1
2,698,149 - Echvi_2277 0.40 +0.5
2,698,149 - Echvi_2277 0.40 +0.4
2,698,172 - Echvi_2277 0.42 -0.1
2,698,177 - Echvi_2277 0.42 +0.7
2,698,177 - Echvi_2277 0.42 -1.5
2,698,194 + Echvi_2277 0.43 +0.7
2,698,302 - Echvi_2277 0.50 -0.5
2,698,377 - Echvi_2277 0.55 -0.6
2,698,409 + Echvi_2277 0.57 -0.9
2,698,410 - Echvi_2277 0.57 +1.4
2,698,410 - Echvi_2277 0.57 +0.9
2,698,410 - Echvi_2277 0.57 -1.8
2,698,415 + Echvi_2277 0.58 +0.1
2,698,416 - Echvi_2277 0.58 -0.7
2,698,479 - Echvi_2277 0.62 +0.7

Or see this region's nucleotide sequence